Dear AMBER users,
I am a new user of AMBER, and I am trying to simulate proteins with non-standard
residues, such as laccase with four copper ions. I read the tutorial about
Plastocyanin (1PLC) which contains one copper ions, but still I am not so sure
how to load these residues into AMBER, shall I create a new library for each of
these four copper ions and then define the bonded atoms etc. parameters? BTW, I
am now using the tleap not xleap as somehow the cluster I am running AMBER on
does not support xleap.
I really appreciate your advice. Thanks a lot!
Best regards,
Hui
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Received on Fri May 26 2006 - 21:05:18 PDT
