AMBER: density

From: mathew k varghese <>
Date: Tue, 16 May 2006 05:02:51 +0100 (BST)

Hello AMBER community,

I have performed an explicit solvent simulation of an
rna duplex in NVE ensemble.When I analysed the output
files using process_mdout.perl the total energy,
potential energy and temperature are stabilized. But
the density is found to be increasing. I dont
understand why it happens.
the summmary.DENSITYfile and my input for production
run are attached. Please look into them and help me.
Thanks in advance



Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
Kottayam, Kerala



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Received on Wed May 17 2006 - 06:07:11 PDT
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