Thanks Dr. Case for the help, that was the problem (nobox),
best wishes
Alfredo Quevedo
Quoting "David A. Case" <case.scripps.edu>:
> On Sat, May 13, 2006, alfredoq.fcq.unc.edu.ar wrote:
>
>> Thanks Ray for the hint. The complete mdcrd file and the file with the
>> stripped waters were very strange. After loading them in VMD the covalente
>> structure was all messed up
>
> The most common problem is that you did not specify "nobox" when you created
> the stripped trajectory file with ptraj.
>
> Of course, I'm just guessing here, but it's worth checking.
>
> ...dac
>
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Received on Wed May 17 2006 - 06:07:06 PDT
