AMBER: Hexahydrated Counterions

From: Mahalakshmi Sahasranaman <mlakshmis.gmail.com>
Date: Wed, 10 May 2006 18:52:02 +0530

Dear Amber users,

I have constructed A-DNA (DNA duplex) using nucgen. I want to add
hexahydrated Na+ counterions at a distance of 5 Angstrom to the phosphorous
atom of the phosphate groups.

"addions adna Na+ 0 " only adds Na+ ions. How to add hexahydrated Na+
counterions at a distance of 5 angstrom to the phosphorous atom of the
phosphate groups ?

Thanks,
Lakshmi

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Received on Sun May 14 2006 - 06:07:05 PDT
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