dear amber users,
i wanted to use hbond analysis in carnal. I am using Amber8. i hve pasted below my input and output file. Kindly suggest me what could be the problem. i hve checked the path of topology file and co-ord file. everything is correct.
input
-------------------------------------------------------
FILES_IN
PARM p1 at-oct.prmtop;
STREAM s1 traject/vp1.mdcrd.gz;
FILES_OUT
HBOND h1 accpt LIST;
HBOND h2 Donr LIST;
DECLARE
GROUP g1 (RES 10);
GROUP g2 (RES 25-5223);
OUTPUT
HBOND h1 DONOR g2 ACCEPTOR g1 STATS;
HBOND h2 DONOR g1 ACCEPTOR g2 STATS;
END
---------------------------------------------------------------
output
---------------------------------------------------------------
- CARNAL -
AMBER 8.0
COORDINATE ANALYSIS
input stdin
> # HBOND analysis
> FILES_IN
> PARM p1 at-oct.prmtop;
Reading parm file (at)
parm: opening at
at: does not exist (nor do .Z or .gz)
---------------------------------------------------------------
thanks in advance,
c.bala
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Received on Thu May 04 2006 - 17:10:40 PDT
