Dear Amber Users:
I am simulating systems composed of hydrocarbon chains. For this purpose I am using antechamber to build the prep input files. I heard that since amber is mainly designed for simulations in aqueous (polar) media, the partial charges calculated from for e.g. antechamber may be overestimated for my hydrophobic system. Which charge method I should use to get the best partial charges for my system?
Thank you for your help.
Sagar Rane
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Received on Mon Nov 28 2005 - 16:53:01 PST
