Re: AMBER: MM_PBSA question

From: David A. Case <case.scripps.edu>
Date: Thu, 24 Nov 2005 10:25:56 -0800

On Thu, Nov 24, 2005, Tiziano Tuccinardi wrote:

> Is it possible to compare the binding free energy of two ligands with a
> different total charge using the MM_PBSA or the MM_GBSA method?

Yes. However, the expected accuracy is probably less, since there is less
cancelation of error than in the case of a comparison of two ligands of the
same change.

....dac

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Thu Nov 24 2005 - 18:53:00 PST
Custom Search