Hi Nitin,
I could load the test.pdb file u sent in xleap. I did not get any error. I
am using AMBER 8. Which version of AMBER are u using?
On Wed, 9 Nov 2005, Nitin Bhardwaj wrote:
> Dear All,
> I have created the inpcrd and prmtop files a lipid molecule using
> the antechamber. While doing this I used a single molecule. Everything
> was fine.
> Then I replicated the molecules to create a bilyer. When I load this
> PDB file containing the bilayer, I get the following message:
>
> In file [chirality.c], line 121
> !FATAL: Message: Atom C67 is not in the first list.
> I tried to follow the program "chirality.c" but could not get it.
> Have any of you seen this problem before? Please let me know if anyone
> can suggest a solution to the problem?
> I am attaching a copy of a single lipid if you wanna look at it.
> Rgds,
> Thanks,
> Nitin
>
--
Ilyas Yildirim
---------------------------------------------------------------
- Department of Chemisty - -
- University of Rochester - -
- Hutchison Hall, # B10 - -
- Rochester, NY 14627-0216 - Ph.:(585) 275 67 66 (Office) -
- http://www.pas.rochester.edu/~yildirim/ -
---------------------------------------------------------------
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Thu Nov 10 2005 - 03:53:00 PST
