Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list

From: Ilyas Yildirim <yildirim.pas.rochester.edu>
Date: Wed, 9 Nov 2005 22:56:24 -0500 (EST)

Hi Nitin,

I could load the test.pdb file u sent in xleap. I did not get any error. I
am using AMBER 8. Which version of AMBER are u using?

On Wed, 9 Nov 2005, Nitin Bhardwaj wrote:

> Dear All,
> I have created the inpcrd and prmtop files a lipid molecule using
> the antechamber. While doing this I used a single molecule. Everything
> was fine.
> Then I replicated the molecules to create a bilyer. When I load this
> PDB file containing the bilayer, I get the following message:
>
> In file [chirality.c], line 121
> !FATAL: Message: Atom C67 is not in the first list.
> I tried to follow the program "chirality.c" but could not get it.
> Have any of you seen this problem before? Please let me know if anyone
> can suggest a solution to the problem?
> I am attaching a copy of a single lipid if you wanna look at it.
> Rgds,
> Thanks,
> Nitin
>

-- 
  Ilyas Yildirim
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Received on Thu Nov 10 2005 - 03:53:00 PST
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