Amber Archive Aug 2005 by thread
212 messages
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Starting
Mon Aug 01 2005 - 03:53:00 PDT,
Ending
Wed Aug 31 2005 - 22:53:02 PDT
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AMBER: AMBER8 crashes machine(nodes) under IBM compiler, Suse Linux, amd IBM loadleveler
Soo
(Sun Jul 31 2005 - 19:45:01 PDT)
AMBER: coordinated water molecules deleted when addions
Ye Mei
(Mon Aug 01 2005 - 02:20:11 PDT)
Re: AMBER: coordinated water molecules deleted when addions
David A. Case
(Mon Aug 01 2005 - 06:39:39 PDT)
RE: AMBER: coordinated water molecules deleted when addions
Ross Walker
(Mon Aug 01 2005 - 10:09:17 PDT)
Re: AMBER: Modeling of a radical
L Jin
(Mon Aug 01 2005 - 06:50:55 PDT)
Re: AMBER: questions about MG ions
JIANING WANG
(Mon Aug 01 2005 - 07:27:45 PDT)
AMBER: ptraj help, how to enable disabled ptraj routine?
opitz.che.udel.edu
(Mon Aug 01 2005 - 08:19:20 PDT)
Re: AMBER: ptraj help, how to enable disabled ptraj routine?
Thomas E. Cheatham, III
(Mon Aug 01 2005 - 13:51:27 PDT)
AMBER: antechamber problem using RESP
luckyang.gmail.com
(Mon Aug 01 2005 - 18:29:26 PDT)
AMBER: AMBER8 limitation of memory in QM/MM calculation
nadtanet nunthaboot
(Mon Aug 01 2005 - 19:21:59 PDT)
RE: AMBER: AMBER8 limitation of memory in QM/MM calculation
Ross Walker
(Mon Aug 01 2005 - 19:52:32 PDT)
RE: AMBER: AMBER8 limitation of memory in QM/MM calculation
Ross Walker
(Mon Aug 01 2005 - 19:52:29 PDT)
AMBER: memory_mm_pbsa
Wei Chen
(Mon Aug 01 2005 - 20:00:34 PDT)
RE: AMBER: memory_mm_pbsa
Ross Walker
(Mon Aug 01 2005 - 20:14:47 PDT)
RE: AMBER: memory_mm_pbsa
Wei Chen
(Mon Aug 01 2005 - 21:03:34 PDT)
AMBER: strange minimalization output
blakrose.gazeta.pl
(Tue Aug 02 2005 - 07:56:38 PDT)
RE: AMBER: strange minimalization output
Ross Walker
(Tue Aug 02 2005 - 08:47:59 PDT)
AMBER: Leap set head/tail question
Kara Di Giorgio
(Tue Aug 02 2005 - 11:01:08 PDT)
RE: AMBER: Leap set head/tail question
Rhoad, Jonathan S.
(Tue Aug 02 2005 - 11:10:42 PDT)
RE: AMBER: Leap set head/tail question
Ross Walker
(Tue Aug 02 2005 - 11:28:03 PDT)
RE: AMBER: Leap set head/tail question
Ilyas Yildirim
(Wed Aug 03 2005 - 14:40:23 PDT)
AMBER: Boron and Amber
Kara Di Giorgio
(Tue Aug 02 2005 - 13:18:46 PDT)
AMBER: bond breaking/ energetic ion
vannajan.chiangmai.ac.th
(Tue Aug 02 2005 - 19:11:16 PDT)
RE: AMBER: bond breaking/ energetic ion
Ross Walker
(Tue Aug 02 2005 - 19:26:02 PDT)
AMBER: power supply crash==>boot problems
Kristof Stevens
(Wed Aug 03 2005 - 01:20:08 PDT)
Re: AMBER: power supply crash==>boot problems
David LeBard
(Wed Aug 03 2005 - 10:20:30 PDT)
AMBER: bond parameters
Gustavo Pierdominici Sottile
(Wed Aug 03 2005 - 07:39:34 PDT)
Re: AMBER: bond parameters
ivan.mmb.pcb.ub.es
(Wed Aug 03 2005 - 07:54:29 PDT)
RE: AMBER: bond parameters
Ross Walker
(Wed Aug 03 2005 - 09:11:00 PDT)
AMBER: installing amber7 on 64bit cluster
MURAT CETINKAYA
(Wed Aug 03 2005 - 08:46:20 PDT)
RE: AMBER: installing amber7 on 64bit cluster
Zhang Bing
(Wed Aug 03 2005 - 18:33:55 PDT)
RE: AMBER: installing amber7 on 64bit cluster
Ross Walker
(Wed Aug 03 2005 - 23:39:22 PDT)
RE: AMBER: installing amber7 on 64bit cluster
MURAT CETINKAYA
(Thu Aug 04 2005 - 08:04:47 PDT)
AMBER: Strange difference in speed between Altix (Itanium2) and Tezro (MIPS) SGI for small GB/SA run
David.Maxwell.di.mdacc.tmc.edu
(Wed Aug 03 2005 - 10:39:43 PDT)
Re: AMBER: Strange difference in speed between Altix (Itanium2) and Tezro (MIPS) SGI for small GB/SA run
Roberto Gomperts
(Thu Aug 04 2005 - 04:57:12 PDT)
Re: AMBER: bond breaking/ energetic ion
Bill Ross
(Wed Aug 03 2005 - 10:41:36 PDT)
AMBER: Error with antechamber
Joseph Fernandez
(Wed Aug 03 2005 - 12:45:29 PDT)
Re: AMBER: Error with antechamber
David A. Case
(Fri Aug 05 2005 - 05:26:36 PDT)
AMBER: a trivial question
Linchen Gong
(Thu Aug 04 2005 - 02:14:04 PDT)
Re: AMBER: a trivial question
Carlos Simmerling
(Thu Aug 04 2005 - 04:28:36 PDT)
RE: Re: AMBER: a trivial question
Linchen Gong
(Fri Aug 05 2005 - 08:26:25 PDT)
RE: Re: AMBER: a trivial question
David LeBard
(Fri Aug 05 2005 - 09:32:47 PDT)
RE: RE: Re: AMBER: a trivial question
Linchen Gong
(Fri Aug 05 2005 - 19:52:39 PDT)
AMBER: nmode
Wei Chen
(Thu Aug 04 2005 - 11:04:17 PDT)
RE: AMBER: nmode
Yong Duan
(Thu Aug 04 2005 - 17:03:26 PDT)
RE: AMBER: nmode
Wei Chen
(Thu Aug 04 2005 - 20:07:43 PDT)
AMBER: Incorrect imaging when using Periodic Boundary Conditions in NAMD with AMBER parameters
Grzegorz Jezierski
(Thu Aug 04 2005 - 11:24:42 PDT)
AMBER: about salt bridges
xueping
(Thu Aug 04 2005 - 23:34:18 PDT)
Re: AMBER: about salt bridges
Carlos Simmerling
(Fri Aug 05 2005 - 04:53:06 PDT)
AMBER: Conformational energy (QM) for parameterization
yuann
(Fri Aug 05 2005 - 03:09:14 PDT)
AMBER: leap question
Kara Di Giorgio
(Fri Aug 05 2005 - 09:38:47 PDT)
Re: AMBER: leap question
David A. Case
(Fri Aug 05 2005 - 15:34:39 PDT)
Re: AMBER: leap question
Kara Di Giorgio
(Fri Aug 05 2005 - 18:56:40 PDT)
Re: AMBER: leap question
David A. Case
(Sat Aug 06 2005 - 04:33:44 PDT)
Re: AMBER: leap question
Kara Di Giorgio
(Sat Aug 06 2005 - 20:02:45 PDT)
AMBER: NMR refinement
Lei Jia
(Fri Aug 05 2005 - 12:50:29 PDT)
AMBER: Convert .prmtop (AMBER7/8) to old format (AMBER6)
Hwankyu Lee
(Fri Aug 05 2005 - 20:44:07 PDT)
Re: AMBER: Convert .prmtop (AMBER7/8) to old format (AMBER6)
David A. Case
(Sat Aug 06 2005 - 04:26:14 PDT)
RE: AMBER: Convert .prmtop (AMBER7/8) to old format (AMBER6)
Ross Walker
(Sat Aug 06 2005 - 11:47:26 PDT)
AMBER: is calculated B-factors always smaller than experimental ones?
haixiao jin
(Sun Aug 07 2005 - 07:57:54 PDT)
Re: AMBER: is calculated B-factors always smaller than experimental ones?
Carlos Simmerling
(Sun Aug 07 2005 - 08:23:42 PDT)
Re: AMBER: is calculated B-factors always smaller than experimental ones?
haixiao jin
(Sun Aug 07 2005 - 22:33:48 PDT)
AMBER: How to calculate hydrogen bond involved with water molecules quickly?
haixiao jin
(Sun Aug 07 2005 - 22:07:48 PDT)
AMBER: Zymeworks job posting
John Vieceli
(Mon Aug 08 2005 - 10:11:42 PDT)
AMBER: RE: is calculated B-factors always smaller than experimental ones?
Yong Duan
(Mon Aug 08 2005 - 11:24:26 PDT)
Re: AMBER: RE: is calculated B-factors always smaller than experimental ones?
haixiao jin
(Mon Aug 08 2005 - 22:47:19 PDT)
AMBER: Tutorial question and some more...
blakrose.gazeta.pl
(Mon Aug 08 2005 - 23:49:45 PDT)
RE: AMBER: Tutorial question and some more...
Ross Walker
(Tue Aug 09 2005 - 12:03:01 PDT)
Re: AMBER: Tutorial question and some more...
blakrose.gazeta.pl
(Tue Aug 09 2005 - 14:00:20 PDT)
Re: AMBER: Tutorial question and some more...
Yam
(Wed Aug 10 2005 - 00:50:54 PDT)
Re: AMBER: Tutorial question and some more...
Bill Ross
(Tue Aug 09 2005 - 11:30:46 PDT)
AMBER: The “crystallographic” waters should be retained or deleted?
haixiao jin
(Wed Aug 10 2005 - 05:35:34 PDT)
AMBER: Creating protonated cytidine residue
Peter Cornish
(Wed Aug 10 2005 - 07:57:17 PDT)
AMBER: replica exchange
Anthony Cruz
(Wed Aug 10 2005 - 11:13:41 PDT)
Re: AMBER: comparing md trajectories
Austin B. Yongye
(Wed Aug 10 2005 - 14:16:08 PDT)
AMBER: ptraj command inputs
opitz.che.udel.edu
(Wed Aug 10 2005 - 15:29:34 PDT)
Re: AMBER: ptraj command inputs
Thomas E. Cheatham, III
(Wed Aug 10 2005 - 15:43:31 PDT)
AMBER: group-based cutoff
John Vieceli
(Wed Aug 10 2005 - 17:44:56 PDT)
RE: AMBER: group-based cutoff
Ross Walker
(Wed Aug 10 2005 - 18:57:35 PDT)
Re: AMBER: group-based cutoff
Thomas E. Cheatham, III
(Wed Aug 10 2005 - 19:53:38 PDT)
AMBER: solvent problem
blakrose.gazeta.pl
(Thu Aug 11 2005 - 00:14:17 PDT)
AMBER: Atom type problem
nag raj
(Thu Aug 11 2005 - 07:18:31 PDT)
Re: AMBER: Atom type problem
Ilyas Yildirim
(Thu Aug 11 2005 - 08:15:28 PDT)
Re: AMBER: Atom type problem
Ilyas Yildirim
(Thu Aug 11 2005 - 09:40:12 PDT)
AMBER: molsurf: problem with calculate surface area
Magne Olufsen
(Fri Aug 12 2005 - 01:06:45 PDT)
AMBER: How is the origin of the grid defined?(PBSA question)
JunJun Liu
(Sun Aug 14 2005 - 09:35:46 PDT)
Re: AMBER: How is the origin of the grid defined?(PBSA question)
Ray Luo
(Sat Aug 13 2005 - 12:40:54 PDT)
Re: AMBER: How is the origin of the grid defined?(PBSA question)
Suxin Zheng
(Tue Aug 16 2005 - 13:54:27 PDT)
Re: AMBER: How is the origin of the grid defined?(PBSA question)
Ray Luo
(Tue Aug 16 2005 - 06:46:01 PDT)
Re: AMBER: How is the origin of the grid defined?(PBSA question)
JunJun Liu
(Tue Aug 23 2005 - 01:46:03 PDT)
Re: AMBER: How is the origin of the grid defined?(PBSA question)
Ray Luo
(Mon Aug 22 2005 - 18:15:48 PDT)
AMBER: wtmol and resp
Guanglei Cui
(Mon Aug 15 2005 - 07:59:42 PDT)
AMBER: difference of energy in sander and nmode in amber 7
sebnem
(Mon Aug 15 2005 - 14:55:24 PDT)
Re: AMBER: difference of energy in sander and nmode in amber 7
sebnem
(Wed Aug 17 2005 - 08:39:02 PDT)
Re: AMBER: difference of energy in sander and nmode in amber 7
David A. Case
(Wed Aug 17 2005 - 09:36:11 PDT)
Re: AMBER: difference of energy in sander and nmode in amber 7
sebnem
(Wed Aug 17 2005 - 10:51:15 PDT)
Re: AMBER: difference of energy in sander and nmode in amber 7
David A. Case
(Thu Aug 18 2005 - 07:39:55 PDT)
AMBER: AMBER on g5 10.4 w/g95 or gfortran
Rachel Burdge
(Tue Aug 16 2005 - 08:12:40 PDT)
Re: AMBER: AMBER on g5 10.4 w/g95 or gfortran
justin litchfield
(Tue Aug 16 2005 - 09:27:26 PDT)
AMBER: Format of atom specifiication after FIND
Joseph Nachman
(Tue Aug 16 2005 - 12:02:55 PDT)
AMBER: min problem
Gustavo Pierdominici Sottile
(Tue Aug 16 2005 - 16:05:56 PDT)
RE: AMBER: min problem
Ross Walker
(Fri Aug 19 2005 - 11:52:36 PDT)
AMBER: Solution for those who have mpich problem while building the parallel version of AMBER 8
Ilyas Yildirim
(Tue Aug 16 2005 - 18:40:11 PDT)
Re: AMBER: Solution for those who have mpich problem while building the parallel version of AMBER 8
S. Teletchéa
(Wed Aug 17 2005 - 16:22:43 PDT)
Re: AMBER: Solution for those who have mpich problem while building the parallel version of AMBER 8
Ilyas Yildirim
(Wed Aug 17 2005 - 17:04:37 PDT)
AMBER: QM/MM
jojartb.pharm.u-szeged.hu
(Wed Aug 17 2005 - 04:42:06 PDT)
RE: AMBER: QM/MM
Ross Walker
(Fri Aug 19 2005 - 11:27:44 PDT)
AMBER: glycan
Wei Chen
(Wed Aug 17 2005 - 11:25:27 PDT)
Re: AMBER: glycan
kkirschn.hamilton.edu
(Wed Aug 17 2005 - 12:55:35 PDT)
Re: AMBER: glycan
Wei Chen
(Wed Aug 17 2005 - 15:29:52 PDT)
AMBER: residence time of electrons/holes in DNA
ioana.pegasus.arc.nasa.gov
(Wed Aug 17 2005 - 14:48:43 PDT)
Re: AMBER: residence time of electrons/holes in DNA
David LeBard
(Wed Aug 17 2005 - 16:43:47 PDT)
AMBER: Energy Comparisons
Kara Di Giorgio
(Wed Aug 17 2005 - 15:00:44 PDT)
Re: AMBER: Energy Comparisons
Wei Chen
(Wed Aug 17 2005 - 15:24:08 PDT)
AMBER: Amber 8: all_nucleic94.lib nucleotide geometry
Angela Liu
(Wed Aug 17 2005 - 15:42:03 PDT)
Re: AMBER: Amber 8: all_nucleic94.lib nucleotide geometry
Bill Ross
(Wed Aug 17 2005 - 16:04:49 PDT)
AMBER: ew_bspline.h error
khn _
(Wed Aug 17 2005 - 20:33:08 PDT)
Re: AMBER: ew_bspline.h error
Michael Crowley
(Fri Aug 19 2005 - 08:54:39 PDT)
RE: AMBER: ew_bspline.h error
Ross Walker
(Fri Aug 19 2005 - 11:33:57 PDT)
RE: AMBER: ew_bspline.h error
Ross Walker
(Fri Aug 26 2005 - 08:03:29 PDT)
AMBER: mm_pbsa
amit.mbu.iisc.ernet.in
(Thu Aug 18 2005 - 14:04:40 PDT)
Re: AMBER: mm_pbsa
Ray Luo
(Thu Aug 18 2005 - 14:43:51 PDT)
Re: AMBER: mm_pbsa
amit.mbu.iisc.ernet.in
(Sat Aug 20 2005 - 00:46:24 PDT)
Re: AMBER: mm_pbsa
Ray Luo
(Sun Aug 21 2005 - 11:29:41 PDT)
AMBER: parm99.dat non-bonded parameters
Angela Liu
(Thu Aug 18 2005 - 15:00:45 PDT)
Re: AMBER: parm99.dat non-bonded parameters
Anthony Fejes
(Fri Aug 19 2005 - 09:35:36 PDT)
Re: AMBER: parm99.dat non-bonded parameters
Angela Liu
(Fri Aug 19 2005 - 10:44:03 PDT)
Re: AMBER: parm99.dat non-bonded parameters
Anthony Fejes
(Fri Aug 19 2005 - 11:18:36 PDT)
AMBER: parallel amber8 with mpi through qsnet
Ye Mei
(Thu Aug 18 2005 - 19:11:55 PDT)
RE: AMBER: parallel amber8 with mpi through qsnet
Ross Walker
(Fri Aug 19 2005 - 11:42:40 PDT)
AMBER: How to construct a lipid bilayer
nag raj
(Thu Aug 18 2005 - 22:01:06 PDT)
AMBER: ptraj correlation facility
Simon Whitehead
(Fri Aug 19 2005 - 02:15:41 PDT)
AMBER: amber8installation
cbala.igib.res.in
(Fri Aug 19 2005 - 05:53:03 PDT)
Re: AMBER: amber8installation
Carlos Simmerling
(Fri Aug 19 2005 - 05:13:24 PDT)
Re: AMBER: amber8installation
cbala.igib.res.in
(Fri Aug 19 2005 - 08:33:44 PDT)
AMBER: shake
Gustavo Pierdominici Sottile
(Fri Aug 19 2005 - 09:37:46 PDT)
Re: AMBER: shake
Carlos Simmerling
(Fri Aug 19 2005 - 09:45:16 PDT)
AMBER: structures extracted from mmpbsa
Lwin, ThuZar
(Fri Aug 19 2005 - 16:25:44 PDT)
AMBER: minimization stuck problem
blakrose.gazeta.pl
(Sat Aug 20 2005 - 04:46:07 PDT)
Re: AMBER: minimization stuck problem
Carlos Simmerling
(Sat Aug 20 2005 - 05:10:45 PDT)
RE: AMBER: minimization stuck problem
Yong Duan
(Sat Aug 20 2005 - 06:05:03 PDT)
RE: AMBER: minimization stuck problem
Ross Walker
(Sat Aug 20 2005 - 11:00:11 PDT)
AMBER: minimization stuck problem
blakrose.gazeta.pl
(Sat Aug 20 2005 - 05:32:31 PDT)
AMBER: AMBER topology file format
santanu chatterjee
(Mon Aug 22 2005 - 02:18:18 PDT)
AMBER: Restraints
kanon gemini
(Mon Aug 22 2005 - 03:58:25 PDT)
Re: AMBER: Restraints
Carlos Simmerling
(Mon Aug 22 2005 - 05:12:26 PDT)
AMBER: minimization stuck problem
blakrose.gazeta.pl
(Mon Aug 22 2005 - 08:17:29 PDT)
Re: AMBER: minimization stuck problem
blakrose.gazeta.pl
(Sat Aug 20 2005 - 14:11:54 PDT)
RE: AMBER: minimization stuck problem
Ross Walker
(Sun Aug 21 2005 - 13:02:09 PDT)
Re: AMBER: minimization stuck problem
Adrian Roitberg
(Sun Aug 21 2005 - 14:29:53 PDT)
RE: AMBER: minimization stuck problem
Ross Walker
(Tue Aug 23 2005 - 08:22:53 PDT)
AMBER: How to deal with the problem that a molecule go out the virtual box in vaccum
Li Su
(Tue Aug 23 2005 - 10:37:38 PDT)
RE: AMBER: How to deal with the problem that a molecule go out the virtual box in vaccum
Ross Walker
(Tue Aug 23 2005 - 21:42:52 PDT)
AMBER: mm_pbsa energy decomposition error
amit.mbu.iisc.ernet.in
(Wed Aug 24 2005 - 05:06:34 PDT)
Re: AMBER: mm_pbsa energy decomposition error
David A. Case
(Wed Aug 24 2005 - 06:26:49 PDT)
Re: AMBER: mm_pbsa energy decomposition error
amit.mbu.iisc.ernet.in
(Thu Aug 25 2005 - 04:57:18 PDT)
AMBER: essential dynamics
Anthony Cruz
(Wed Aug 24 2005 - 10:50:03 PDT)
Re: AMBER: essential dynamics
John Mongan
(Wed Aug 24 2005 - 09:27:46 PDT)
AMBER: Replica exchange
Anthony Cruz
(Wed Aug 24 2005 - 10:57:42 PDT)
AMBER: a problem encountered when trying to equalibrate alanine dipeptide in explicit water
Li Su
(Wed Aug 24 2005 - 10:36:06 PDT)
RE: AMBER: a problem encountered when trying to equalibrate alanine dipeptide in explicit water
Ross Walker
(Wed Aug 24 2005 - 10:45:59 PDT)
AMBER: ptraj efficiency
justin litchfield
(Wed Aug 24 2005 - 11:13:03 PDT)
RE: AMBER: ptraj efficiency
Ross Walker
(Wed Aug 24 2005 - 11:29:36 PDT)
AMBER: RED II and Gaussian
Raviprasad Aduri
(Wed Aug 24 2005 - 19:01:46 PDT)
Re: AMBER: RED II and Gaussian
FyD
(Sat Aug 27 2005 - 08:02:09 PDT)
Re: AMBER: RED II and Gaussian
rpaduri.chem.wayne.edu
(Sat Aug 27 2005 - 15:40:53 PDT)
AMBER: Antechamber error "Cannot successfully assign bond type for this molecule"
Whitney Allen
(Thu Aug 25 2005 - 09:13:11 PDT)
AMBER: PLease remove my post
rpaduri.chem.wayne.edu
(Thu Aug 25 2005 - 09:08:38 PDT)
AMBER: Add constraints over time
Andrew Box
(Thu Aug 25 2005 - 22:51:49 PDT)
RE: AMBER: Add constraints over time
Ross Walker
(Fri Aug 26 2005 - 09:41:04 PDT)
AMBER: minimization
blakrose.gazeta.pl
(Fri Aug 26 2005 - 05:20:25 PDT)
RE: AMBER: minimization
Ross Walker
(Fri Aug 26 2005 - 08:07:59 PDT)
AMBER: replica exchange
Anthony Cruz
(Fri Aug 26 2005 - 09:53:48 PDT)
Re: AMBER: replica exchange
Carlos Simmerling
(Fri Aug 26 2005 - 08:16:51 PDT)
Re: AMBER: replica exchange
Anthony Cruz
(Fri Aug 26 2005 - 11:14:47 PDT)
AMBER: NRESPA
Sergio E. Wong
(Sat Aug 27 2005 - 12:12:29 PDT)
AMBER: compilation problem (Mac OS X.4)
Mark H. Schofield
(Fri Aug 26 2005 - 09:07:05 PDT)
Re: AMBER: Replica exchange
Carlos Simmerling
(Sun Aug 28 2005 - 06:16:46 PDT)
Re: AMBER: Replica exchange
Anthony Cruz
(Mon Aug 29 2005 - 05:46:52 PDT)
AMBER: can I setup a simulation with restrain the COM of a group to a reference structure?
bzlu.ucsd.edu
(Sun Aug 28 2005 - 13:32:33 PDT)
AMBER: Temperature equilibration
Anthony Cruz
(Mon Aug 29 2005 - 05:44:04 PDT)
RE: AMBER: Temperature equilibration
Ross Walker
(Mon Aug 29 2005 - 08:44:08 PDT)
Re: AMBER: Temperature equilibration
Anthony Cruz
(Mon Aug 29 2005 - 12:47:36 PDT)
AMBER: params for cofactors
Michael Dolan
(Mon Aug 29 2005 - 12:54:41 PDT)
RE: AMBER: params for cofactors
Ross Walker
(Mon Aug 29 2005 - 13:10:55 PDT)
Re: AMBER: params for cofactors
Michael Dolan
(Mon Aug 29 2005 - 13:23:10 PDT)
AMBER:
anwar.cdfd.org.in
(Mon Aug 29 2005 - 20:59:49 PDT)
AMBER: floating point exception
anwar.cdfd.org.in
(Mon Aug 29 2005 - 21:00:31 PDT)
AMBER: floating point exception
anwar.cdfd.org.in
(Tue Aug 30 2005 - 19:27:47 PDT)
RE: AMBER: floating point exception
Ross Walker
(Wed Aug 31 2005 - 09:51:27 PDT)
AMBER: in vacuo?
Yam
(Tue Aug 30 2005 - 02:53:07 PDT)
Re: AMBER: in vacuo?
blakrose.gazeta.pl
(Wed Aug 31 2005 - 02:44:00 PDT)
AMBER: MM-PBSA and 1-4 nonbonded interactions
Nelson Fonseca
(Wed Aug 31 2005 - 07:55:31 PDT)
AMBER: nmode minimization and normal mode calculation
Bing Xiong
(Tue Aug 30 2005 - 06:53:11 PDT)
Re: AMBER: nmode minimization and normal mode calculation
David A. Case
(Tue Aug 30 2005 - 07:38:14 PDT)
AMBER: Temperature regulation
Monica Civera
(Tue Aug 30 2005 - 07:43:26 PDT)
Re: AMBER: Temperature regulation
David A. Case
(Tue Aug 30 2005 - 15:45:13 PDT)
AMBER: Lennard-Jones coeff...
Pavan G
(Tue Aug 30 2005 - 13:26:49 PDT)
AMBER: Re:Antechamber
Raviprasad Aduri
(Tue Aug 30 2005 - 16:34:33 PDT)
AMBER: disulfide bonds by "bond" or "edit -> draw" ?
Benjamin Juhl
(Wed Aug 31 2005 - 09:23:45 PDT)
RE: AMBER: disulfide bonds by "bond" or "edit -> draw" ?
Ross Walker
(Wed Aug 31 2005 - 09:48:39 PDT)
Re: AMBER: disulfide bonds by "bond" or "edit -> draw" ?
Bill Ross
(Wed Aug 31 2005 - 09:57:23 PDT)
AMBER: Interpreting Amber8 Benchmark Results
Nikhil Kelshikar \(nkelshik\)
(Wed Aug 31 2005 - 10:07:24 PDT)
RE: AMBER: Interpreting Amber8 Benchmark Results
Ross Walker
(Wed Aug 31 2005 - 13:09:20 PDT)
Re: AMBER: Interpreting Amber8 Benchmark Results
Robert Duke
(Wed Aug 31 2005 - 13:34:42 PDT)
RE: AMBER: Interpreting Amber8 Benchmark Results
Bill Ross
(Wed Aug 31 2005 - 13:44:55 PDT)
RE: AMBER: Interpreting Amber8 Benchmark Results
Ross Walker
(Wed Aug 31 2005 - 14:00:55 PDT)
RE: AMBER: Interpreting Amber8 Benchmark Results
Bill Ross
(Wed Aug 31 2005 - 14:29:58 PDT)
Re: AMBER: Interpreting Amber8 Benchmark Results
Robert Duke
(Wed Aug 31 2005 - 14:37:53 PDT)
AMBER: Why are some of the Lennard-Jones coeffs 0 ?
Pavan G
(Wed Aug 31 2005 - 10:18:28 PDT)
Re: AMBER: Why are some of the Lennard-Jones coeffs 0 ?
Thomas E. Cheatham, III
(Wed Aug 31 2005 - 10:53:38 PDT)
AMBER: addles question
Kevin Murphy
(Wed Aug 31 2005 - 14:46:00 PDT)
Last message date
:
Wed Aug 31 2005 - 22:53:02 PDT
Archived on
: Fri Sep 06 2024 - 05:53:27 PDT
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