=>> Init data Presuming executables of amber suite to be in /usr/local/amber7/exe =>> Reading input parameters Found PREFIX => test_traj Found PATH => ./ Found COMPLEX => 1 Found RECEPTOR => 0 Found LIGAND => 0 Found COMPT => ./mans.prmtop Found RECPT => Found LIGPT => Found GC => 0 Found AS => 0 Found DC => 0 Found MM => 1 Found GB => 1 Found PB => 0 Found MS => 0 Found NM => 0 Found IGB => 1 Found SALTCON => 0.00 Found EXTDIEL => 80.0 Found SURFTEN => 0.0072 Found SURFOFF => 0.00 =>> Checking sanity Checking GENERAL Implicit SAS calc by sander Checking MM Checking GB =>> Creating input Sander input =>> Calculating energy / entropy contributions Calc contrib for ./test_traj_com.crd.1 Calc MM/GB/SAS Calc contrib for ./test_traj_com.crd.2 Calc MM/GB/SAS