AMBER: Failed sander runs for large systems

From: Pratul K. Agarwal <pagarwal.linus.ornl.gov>
Date: Fri, 29 Jul 2005 22:41:44 -0400 (EDT)

Problem: Failed sander runs with following error messages.
Please note, these messages are from 2 different runs:
ERROR: Flag "IROTAT" not found in PARM file
ERROR: Flag "ANGLES_WITHOUT_HYDROGEN" not found in PARM file

Details:
Large system (520,000 and 1,000,000 atoms). Patches by Vlad
applied for system beyond 1 million atoms
(http://amber.ch.ic.ac.uk/archive/200302/0224.html).
Runs on 16 processor machine (Cray XT3). Compiler: PGI v6.0
with MPICH.

Any help with be highly appreciated.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sat Jul 30 2005 - 03:53:01 PDT
Custom Search