Re: AMBER: ambpdb core dump

From: David A. Case <>
Date: Fri, 29 Jul 2005 07:40:03 -0700

On Fri, Jul 29, 2005, Peter Gannett wrote:
> I'm having a problem with ambpdb. I made a residue (so this is not a
> standard base or amino acid). In xleap, I made top/crd and pdb files.
> This was done without complaint from xleap. The top and crd files were
> used for a MM run which completed successfully and a rst file was
> written. I attempted to make a pdb file with the original top and rst
> files....
> ambpdb -p < XXX.rst > XXX.pdb
> and get a core dump.

Have you applied bugfix.29? If so, you should post the top and rst files,
and we will see if we can reproduce this.

> but when moil-view writes a pdb, it changes all the atom types to DUMM.

(This is a little confusing, since pdb files don't contain atom-type

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Received on Fri Jul 29 2005 - 15:53:01 PDT
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