Re: AMBER: fit

From: Kateryna Miroshnychenko <>
Date: Mon, 25 Jul 2005 13:11:11 +0300

Dear Yong,

Try following

trajin your_trajectory_file.mdcrd
trajout coord_20_40.mdcrd
rms first out your.rms :20,21,39,40 time x.x
strip :1-19,41-100

x.x is time interval between to subsequent snapshots of your
trajectory. It is needed if you want to plot rms versus time.


> I want to output the coordinates of residues 20-40 of a protein (100 residues), at the same time I want to do fit acoording
> to residues 20,21, 39 and 40.
> how to write or file to do this ?
> any suggestin would be highly appreciated!
> Yong Xu

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Received on Mon Jul 25 2005 - 11:53:00 PDT
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