AMBER: Leap compilation issues

From: justin litchfield <litch.stanford.edu>
Date: Sun, 10 Jul 2005 18:41:50 -0700

i am now trying to install amber on a new Athlon 64 running FC4.
everything seems to go great, i'm using gcc 4, ifc 8.1, but when it
gets to the leap installation it crashes out. i've applied bugfixes,
searched around for anything that i'm missing, and am stumped.
here's the output from just compiling leap

[root.jd10 leap]# make install
Compiling basic programs
cd src/Wc; make
make[1]: Entering directory `/usr/local/amber8/src/leap/src/Wc'
Makefile:10: warning: overriding commands for target `.c.o'
.../../../config.h:87: warning: ignoring old commands for target `.c.o'
gcc -c -I/usr/X11R6/include -O2 -o MapAg.o MapAg.c
MapAg.c: In function ‚€˜Malloc‚€™:
MapAg.c:131: warning: incompatible implicit declaration of built-in
function ‚€˜malloc‚€™
MapAg.c:135: warning: incompatible implicit declaration of built-in
function ‚€˜abort‚€™
MapAg.c:136: warning: incompatible implicit declaration of built-in
function ‚€˜exit‚€™
MapAg.c: In function ‚€˜Calloc‚€™:
MapAg.c:144: warning: incompatible implicit declaration of built-in
function ‚€˜calloc‚€™
MapAg.c:150: warning: incompatible implicit declaration of built-in
function ‚€˜abort‚€™
MapAg.c:151: warning: incompatible implicit declaration of built-in
function ‚€˜exit‚€™
MapAg.c: In function ‚€˜MapAg_FirstGuessAtHashAlgorithm‚€™:
MapAg.c:190: warning: cast from pointer to integer of different size
MapAg.c:209: warning: cast from pointer to integer of different size
MapAg.c:226: warning: cast from pointer to integer of different size
MapAg.c: In function ‚€˜MapAg_ReHashUnderCollisionLimit‚€™:
MapAg.c:289: warning: cast from pointer to integer of different size
MapAg.c:289: warning: cast from pointer to integer of different size
MapAg.c:289: warning: cast from pointer to integer of different size
MapAg.c:308: warning: cast from pointer to integer of different size
MapAg.c:308: warning: cast from pointer to integer of different size

<<about a billion pages chopped out here for your reading pleasure,
then>>
WcActCB.c:1536: error: syntax error before ‚€˜}‚€™ token
WcActCB.c:1538: error: syntax error before ‚€˜(‚€™ token
make[1]: *** [WcActCB.o] Error 1
make[1]: Leaving directory `/usr/local/amber8/src/leap/src/Wc'
make: *** [install] Error 2

any thoughts/suggestions? thanks,

justin


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Received on Mon Jul 11 2005 - 03:53:00 PDT
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