Hi Vijay,
Above all, see the amber manual: http://amber.scripps.edu/ - the chapter on
force-fields and the last chapter on science background are a good start.
Just gave a structural bioinformatics course that has online material on
force-fields and MD:
http://bioportal.weizmann.ac.il/course/3dbioinfo/syllabus.html
While it is not meant to be self-sufficient, it has a few pointers to
different web sites. Also, hardly included the important topic of
poisson-boltzman theory covered in the amber tutorial and in Helge/Bourne
book (chapter 21).
feedback/error-fixing on our course is more than welcome...
good luck,
ilan
________________________
Ilan.Samish.weizmann.ac.il
Plant Sciences Department
Weizmann Institute of Science
Tel: 972 8 934 4300
Fax: 972 8 934 4181
Mobile: 972 52 3321150
http://bioinfo.weizmann.ac.il/~samish/
~~~~~~~~~~~~~~~~~~~~~~~~~~
----- Original Message -----
From: "Vijay Manickam Achari" <vjrajamany.yahoo.com>
To: "Amber Scrops" <amber.scripps.edu>
Sent: Sunday, July 10, 2005 5:55 AM
Subject: AMBER: molecular dynamics
> Dear all amber users
>
> Can any one know or tell any internet side (web
> address) where we can fine simple and precise
> explanation about molecular dynamics simulation and
> its algorithm other than available famous books?
>
> Thank you
>
> Vijay
>
>
>
>
>
> ___________________________________________________________
> Yahoo! Messenger - NEW crystal clear PC to PC calling worldwide with
> voicemail http://uk.messenger.yahoo.com
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun Jul 10 2005 - 07:53:00 PDT
