Dear AMBER users,
I have some questions about building starting
structures for simulations.
How can I build nucleic acids with bulges, mismatches
etc.? Could I use NUCGEN for this?
How can I change the conformation of a particular base
say, a bulge in a crystal structure (looped out
conformation to stacked in) without altering the
otherbases? Is there any software available for this.
How can I build complexes of nucleic acids with small
molecules?
Thanks in advance
Mathew
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/\/\athew
Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
M.G.University
Kottayam, Kerala
India
email mathew_kvarghese.yahoo.co.in
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Received on Fri Jul 08 2005 - 05:53:00 PDT
