Re: AMBER: problem with addIons

From: David A. Case <case.scripps.edu>
Date: Wed, 6 Jul 2005 15:41:21 -0700

On Wed, Jul 06, 2005, Lwin, ThuZar wrote:
>
> Lastly, I downloaded the pdb file from amber8 tutorial 1PLC.inpcrd.pdb this
> pdb also shows ions at one corner.

I can't reproduce this: the ions look fine to me (not all in one corner, but
reasonably distributed around the protein.)

I got the file from here:

 http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/index.htm

How are you doing the visualization?

....dac

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Received on Wed Jul 06 2005 - 23:53:00 PDT
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