VMD has a feature like that.
Ye Mei wrote:
>Dear amber users,
>
>Does anyone know how to estimate the interface size between ligand/protein or protein/protein?
>
>
>Best regards,
>
>Ye Mei
>ymei.itcc.nju.edu.cn
>Institute of Theoretical and Computational Chemistry
>Key Laboratory of Mesoscopic Chemistry
>School of Chemistry and Chemical Engineering
>Nanjing University
>Nanjing 210093
>P.R.China
>2005-07-04
>
>
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Received on Mon Jul 04 2005 - 12:53:01 PDT