cd sander; make parallel make[1]: Entering directory `/root/Installs/amber8/src/sander' cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI trace.f > _trace.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o trace.o _trace.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI lmod.f > _lmod.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o lmod.o _lmod.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI decomp.f > _decomp.f pgf90 -c -O -Mextend -fastsse -Mfree -o decomp.o _decomp.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI icosasurf.f > _icosasurf.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o icosasurf.o _icosasurf.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI egb.f > _egb.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o egb.o _egb.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI findmask.f > _findmask.f pgf90 -c -O -Mextend -fastsse -Mfree -o findmask.o _findmask.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI pb_force.f > _pb_force.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o pb_force.o _pb_force.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI fastwt.f > _fastwt.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o fastwt.o _fastwt.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI sander.f > _sander.f pgf90 -c -O -Mextend -fastsse -Mfree -o sander.o _sander.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI cshf.f > _cshf.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o cshf.o _cshf.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI noecalc.f > _noecalc.f pgf90 -c -O -Mextend -fastsse -Mfree -o noecalc.o _noecalc.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI noeread.f > _noeread.f pgf90 -c -O -Mextend -fastsse -Mfree -o noeread.o _noeread.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI caldis.f > _caldis.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o caldis.o _caldis.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI calrate.f > _calrate.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o calrate.o _calrate.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI dinten.f > _dinten.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o dinten.o _dinten.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI drates.f > _drates.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o drates.o _drates.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI indexn.f > _indexn.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o indexn.o _indexn.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI kmat.f > _kmat.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o kmat.o _kmat.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI pearsn.f > _pearsn.f pgf90 -c -O -Mextend -fastsse -Mfree -o pearsn.o _pearsn.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI plane.f > _plane.f pgf90 -c -O -Mextend -fastsse -Mfree -o plane.o _plane.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI remarc.f > _remarc.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o remarc.o _remarc.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrcal.f > _nmrcal.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrcal.o _nmrcal.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrred.f > _nmrred.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrred.o _nmrred.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI restal.f > _restal.f pgf90 -c -O -Mextend -fastsse -Mfree -o restal.o _restal.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI getnat.f > _getnat.f pgf90 -c -O -Mextend -fastsse -Mfree -o getnat.o _getnat.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrnrg.f > _nmrnrg.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrnrg.o _nmrnrg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI modwt.f > _modwt.f pgf90 -c -O -Mextend -fastsse -Mfree -o modwt.o _modwt.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI disnrg.f > _disnrg.f pgf90 -c -O -Mextend -fastsse -Mfree -o disnrg.o _disnrg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI angnrg.f > _angnrg.f pgf90 -c -O -Mextend -fastsse -Mfree -o angnrg.o _angnrg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI tornrg.f > _tornrg.f pgf90 -c -O -Mextend -fastsse -Mfree -o tornrg.o _tornrg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrprt.f > _nmrprt.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrprt.o _nmrprt.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrgrp.f > _nmrgrp.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrgrp.o _nmrgrp.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrcms.f > _nmrcms.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrcms.o _nmrcms.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrcmf.f > _nmrcmf.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrcmf.o _nmrcmf.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI impnum.f > _impnum.f pgf90 -c -O -Mextend -fastsse -Mfree -o impnum.o _impnum.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrsht.f > _nmrsht.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrsht.o _nmrsht.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI at2res.f > _at2res.f pgf90 -c -O -Mextend -fastsse -Mfree -o at2res.o _at2res.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI chklin.f > _chklin.f pgf90 -c -O -Mextend -fastsse -Mfree -o chklin.o _chklin.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI opnmrg.f > _opnmrg.f pgf90 -c -O -Mextend -fastsse -Mfree -o opnmrg.o _opnmrg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI printe.f > _printe.f pgf90 -c -O -Mextend -fastsse -Mfree -o printe.o _printe.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI runmin.f > _runmin.f pgf90 -c -O -Mextend -fastsse -Mfree -o runmin.o _runmin.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ndvprt.f > _ndvprt.f pgf90 -c -O -Mextend -fastsse -Mfree -o ndvprt.o _ndvprt.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI force.f > _force.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o force.o _force.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI rdparm.f > _rdparm.f pgf90 -c -O -Mextend -fastsse -Mfree -o rdparm.o _rdparm.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI mdread.f > _mdread.f pgf90 -c -O -Mextend -fastsse -Mfree -o mdread.o _mdread.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI locmem.f > _locmem.f pgf90 -c -O -Mextend -fastsse -Mfree -o locmem.o _locmem.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI runmd.f > _runmd.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o runmd.o _runmd.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI getcor.f > _getcor.f pgf90 -c -O -Mextend -fastsse -Mfree -o getcor.o _getcor.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI r6ave.f > _r6ave.f pgf90 -c -O -Mextend -fastsse -Mfree -o r6ave.o _r6ave.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI r6drv.f > _r6drv.f pgf90 -c -O -Mextend -fastsse -Mfree -o r6drv.o _r6drv.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI aveint.f > _aveint.f pgf90 -c -O -Mextend -fastsse -Mfree -o aveint.o _aveint.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI degcnt.f > _degcnt.f pgf90 -c -O -Mextend -fastsse -Mfree -o degcnt.o _degcnt.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI corf.f > _corf.f pgf90 -c -O -Mextend -fastsse -Mfree -o corf.o _corf.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI threeb.f > _threeb.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o threeb.o _threeb.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI tripl.f > _tripl.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o tripl.o _tripl.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmrrad.f > _nmrrad.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmrrad.o _nmrrad.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI decnvh.f > _decnvh.f pgf90 -c -O -Mextend -fastsse -Mfree -o decnvh.o _decnvh.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI echoin.f > _echoin.f pgf90 -c -O -Mextend -fastsse -Mfree -o echoin.o _echoin.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI parallel.f > _parallel.f pgf90 -c -O -Mextend -fastsse -Mfree -o parallel.o _parallel.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI jnrg.f > _jnrg.f pgf90 -c -O -Mextend -fastsse -Mfree -o jnrg.o _jnrg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI shake.f > _shake.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o shake.o _shake.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ene.f > _ene.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ene.o _ene.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI mdwrit.f > _mdwrit.f pgf90 -c -O -Mextend -fastsse -Mfree -o mdwrit.o _mdwrit.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI minrit.f > _minrit.f pgf90 -c -O -Mextend -fastsse -Mfree -o minrit.o _minrit.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI set.f > _set.f pgf90 -c -O -Mextend -fastsse -Mfree -o set.o _set.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI setmm.f > _setmm.f pgf90 -c -O -Mextend -fastsse -Mfree -o setmm.o _setmm.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI dynlib.f > _dynlib.f pgf90 -c -O -Mextend -fastsse -Mfree -o dynlib.o _dynlib.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI mdfil.f > _mdfil.f pgf90 -c -O -Mextend -fastsse -Mfree -o mdfil.o _mdfil.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI nmlsrc.f > _nmlsrc.f pgf90 -c -O -Mextend -fastsse -Mfree -o nmlsrc.o _nmlsrc.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_force.f > _ew_force.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_force.o _ew_force.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_setup.f > _ew_setup.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_setup.o _ew_setup.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_box.f > _ew_box.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_box.o _ew_box.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_bspline.f > _ew_bspline.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_bspline.o _ew_bspline.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_fft.f > _ew_fft.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_fft.o _ew_fft.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_direct.f > _ew_direct.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_direct.o _ew_direct.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_recip.f > _ew_recip.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_recip.o _ew_recip.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI pcshift.f > _pcshift.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o pcshift.o _pcshift.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI align.f > _align.f pgf90 -c -O -Mextend -fastsse -Mfree -o align.o _align.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI rstack.f > _rstack.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o rstack.o _rstack.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI istack.f > _istack.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o istack.o _istack.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI rfree.f > _rfree.f pgf90 -c -O -Mextend -fastsse -Mfree -o rfree.o _rfree.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI rgroup.f > _rgroup.f pgf90 -c -O -Mextend -fastsse -Mfree -o rgroup.o _rgroup.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI random.f > _random.f pgf90 -c -O -Mextend -fastsse -Mfree -o random.o _random.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI lsqfit.f > _lsqfit.f pgf90 -c -O -Mextend -fastsse -Mfree -o lsqfit.o _lsqfit.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI amopen.f > _amopen.f pgf90 -c -O -Mextend -fastsse -Mfree -o amopen.o _amopen.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI debug.f > _debug.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o debug.o _debug.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_recip_reg.f > _ew_recip_reg.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_recip_reg.o _ew_recip_reg.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_handle_dips.f > _ew_handle_dips.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_handle_dips.o _ew_handle_dips.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI ew_dipole_recip.f > _ew_dipole_recip.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o ew_dipole_recip.o _ew_dipole_recip.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI mexit.f > _mexit.f pgf90 -c -O -Mextend -fastsse -Mfree -o mexit.o _mexit.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI new_time.f > _new_time.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o new_time.o _new_time.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI extra_pts.f > _extra_pts.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o extra_pts.o _extra_pts.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI thermo_int.f > _thermo_int.f pgf90 -c -O -Mextend -fastsse -Mfree -o thermo_int.o _thermo_int.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI matinv.f > _matinv.f pgf90 -c -O -Mextend -fastsse -Mfree -o matinv.o _matinv.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI assert.f > _assert.f pgf90 -c -O -Mextend -fastsse -Mfree -o assert.o _assert.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI mmtsb.f > _mmtsb.f pgf90 -c -O -Mextend -fastsse -Mfree -o mmtsb.o _mmtsb.f pgcc -c -O2 -Mcache_align -o mmtsb_client.o mmtsb_client.c PGC-W-0006-Empty translation unit (mmtsb_client.c) PGC/x86-64 Linux/x86-64 5.2-4: compilation completed with warnings cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI erfcfun.f > _erfcfun.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o erfcfun.o _erfcfun.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI veclib.f > _veclib.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o veclib.o _veclib.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI mdm.f > _mdm.f pgf90 -c -O -Mextend -fastsse -Mfree -o mdm.o _mdm.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI pb_init.f > _pb_init.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o pb_init.o _pb_init.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI constantph.f > _constantph.f pgf90 -c -O -Mextend -fastsse -O3 -Mfree -o constantph.o _constantph.f cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI prn_dipoles.f > _prn_dipoles.f pgf90 -c -O -Mextend -fastsse -Mfree -o prn_dipoles.o _prn_dipoles.f cd ../lib; make sys.a make[2]: Entering directory `/root/Installs/amber8/src/lib' cpp -traditional -I/usr/local/mpich-1.2.6/include -P -I/root/Installs/amber8/src/include -DMPI sys.f > _sys.f pgf90 -c -O -Mextend -fastsse -o sys.o _sys.f pgcc -c -O2 -Mcache_align -o wallclock.o wallclock.c PGC-F-0206-Can't find include file stddef.h (/usr//include/bits/types.h: 31) PGC/x86-64 Linux/x86-64 5.2-4: compilation aborted make[2]: *** [wallclock.o] Error 2 make[2]: Leaving directory `/root/Installs/amber8/src/lib' make[1]: *** [syslib] Error 2 make[1]: Leaving directory `/root/Installs/amber8/src/sander' make: *** [parallel] Error 2