Re: AMBER: radii "leap" from which file

From: David A. Case <>
Date: Wed, 9 Mar 2005 17:02:43 -0800

On Tue, Mar 08, 2005, wrote:
> I am using AMBER 7. I have a question about radii parameter stored in
> topology file: which parameter file contains radii, such as Bondi
> radii, modified Bondi radii, gbjsb or mgbjsb? The default radii are
> modified Bondi radii.

Look in $AMBERHOME/src/leap/src/leap/unitio.c; search for "Bondi". These
are hard-wired into the code, and are not read from any file. (Patches to
fix this are welcome!)

....good luck...dac

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Received on Thu Mar 10 2005 - 01:53:00 PST
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