http://amber.scripps.edu/tutorial/polyA-polyT_New/minandmd1.html#3.3.2
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|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 |
| EMail:- ross.rosswalker.co.uk |
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http://www.rosswalker.co.uk/ | PGP Key available on request |
> -----Original Message-----
> From: owner-amber.scripps.edu
> [mailto:owner-amber.scripps.edu] On Behalf Of Yong Xu
> Sent: 08 December 2004 22:11
> To: amber.scripps.edu
> Subject: AMBER: calculate ligand's rmsd
>
> Dear Amber-users
>
> how to calculate ligand's rmsd by fitting all protein atoms
> (or CA atoms) ?
> how to set carnal_rms.in, and then I can use carnal <carnal_rms.in ?
>
>
> thanks in advance
>
>
> Yong Xu
> yxu.mail.sioc.ac.cn
> 2004-12-09
>
>
>
> ******************************************************************
> * State Key Lab of Bioorganic & Natural Product Chemistry *
> * Shanghai Institute of Organic Chemistry *
> * Chinese Academy of Science *
> * 354 Feng Lin Road, Xu Hui District *
> * Shanghai, 200032, China *
> * Email: yxu.mail.sioc.ac.cn *
> *******************************
>
>
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Received on Thu Dec 09 2004 - 06:53:00 PST
