Re: Re: AMBER: Why the surface calculations sometimes fail?

From: hj zou <hjzou.iris3.simm.ac.cn>
Date: Thu, 9 Dec 2004 9:58:19 +0800

Dear David A. Case,

           Please find enclosed as attachment the log file and pdb.
This is the ninth complex snapshot extracted from trajectory.
The calculation of surface area of this snapshot failed while that of
the previous eitht snapshots worked well.
     Thanks in advance.

======= 2004-12-08 11:52:00 you wrote£º=======

>On Wed, Dec 08, 2004, hj zou wrote:
>>
>> ERROR:
>> ==> 1nrl_co_srl_com.mslog.10 <==
>>
>> 5067 atoms read
>>
>> WARNING: 3 cusps intersection: not trimmed yet
>> WARNING: 3 cusps intersection: not trimmed yet
>> two many interesecting cusps 6
>>
>
>Can you post the pdb file that gives this error?
>
>....thanks...dave case
>
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= = = = = = = = = = = = = = = = = = = =
                        
************************************************
Hanjun Zou
555 Zu Chong Zhi Road, Zhangjiang Hi-Tech Park
Drug Discovery and Design Center
Shanghai Institute of Meteria Medica
Chinese Academy of Sciences
Shanghai 201203, China
Tel£º +86-21-50806600-1201
E-mail: hjzou.mail.shcnc.ac.cn
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Received on Thu Dec 09 2004 - 02:53:01 PST
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