AMBER: how to neutralize the peptide

From: Ye Mei <>
Date: Wed, 27 Oct 2004 10:10:23 +0800

Dear Amber users

Could anyone tell me how to neutrolize the peptide in leap.
By default, leap adds charges to terminals and some sidechains. But I need neutralized peptide and force field parameters for each atom.
Can anyone give any help?

Best regards,

Ye Mei
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Received on Wed Oct 27 2004 - 03:53:00 PDT
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