Re: AMBER: amber 8 error

From: Andreas Svrcek-Seiler <>
Date: Tue, 19 Oct 2004 11:00:59 +0200 (CEST)

> /usr/local/amber8/exe/sander: error while loading
> shared libraries: cannot open shared
> object file: No such file or directory
> why?
because is not in the library search PATH
> for your information i already did :-
> cp -s -f /usr/local/c++/lib* . (the directory is c++
> because the c++ compiler in this directory)
> and
> cp -s -f /usr/local/l_fc_p_8.1.018/lib/* .

....cp /usr/local/l_fc_p_8.1.018/lib/* $DIR,
then (for the (t)csh-shell):
where $DIR is an appropriate directory (exported via NFS to all linux
boxes in my case). Other shells might require a slightly different syntax.
Note that when sander runs are invoked by csh-scripts, these need
#!/bin/csh -f
in the first line, so that LD_LIBRARY_PATH is "visible" inside the script.
Of course one could copy all intel libs /lib or /usr/lib as an
alternative, but that complicates compiler updates etc.
....hope that helps,
best regards
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Received on Tue Oct 19 2004 - 10:53:00 PDT
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