Hello amber users,
I would like to know exactly where is the NAB program taking the
structural information in its data base (residue library) which is further
used to generate initial structures for DNA/RNA molecules.
I would assume that the origin of the coordinates comes from X-ray
diffraction data but I was unable to find the right reference for this.
Does anyone know it?
Also does the NAB data base include some optimizations on these X-ray
diffraction data based on the amber (cornell94) force field or some other
force field/technique? Is there a
reference that discusses this optimization in detail as well?
I would appreciate if anyone knowledgeable would respond to this query.
Thank you,
Ioana
******************
Ioana Cozmuta, PhD
Research Scientist
Eloret Corporation
Mail Stop 230-3
NASA AMES Research Center
Moffet Field, CA 94035-1000
Phone: (650) 604-0993
http://ipt.arc.nasa.gov/cozmuta.html
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Received on Mon Oct 18 2004 - 22:53:01 PDT
