Dear Amber users,
I am trying to analyze the modes from PCA analysis by calculating the
rms fluctuation. I am using the following script:
trajin ../../comp_loop_P.mdcrd
analyze modes displ out displacement.dat file evecs.pev beg 1 end 1
analyze modes fluct out fluctuation.dat file evecs.pev beg 1 end 1
go
The problem is that my results are always printed on STOUT although I
gave an output file. Could somebody explain to me why?
The file evecs.pev is obtained with analyze matrix command.
Thank you very much
vlad
--
Vlad Cojocaru
Max Planck Institute for Biophysical Chemistry
Department: 060
Am Fassberg 11, 37077 Goettingen, Germany
tel: ++49-551-201.1327
e-mail: Vlad.Cojocaru.mpi-bpc.mpg.de
home tel: ++49-551-9963204
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Received on Thu Oct 07 2004 - 14:53:00 PDT
