Re: AMBER: how to visualize modes from PCA

From: Carlos Simmerling <>
Date: Mon, 27 Sep 2004 12:13:10 -0400

you might look at
it's designed for something slightly different but may be what you want.

Carlos L. Simmerling, Ph.D.
Associate Professor Phone: (631) 632-1336
Center for Structural Biology Fax: (631) 632-1555
Stony Brook University Web:
Stony Brook, NY 11794-5115 E-mail:

Vlad Cojocaru wrote:

> Dear Amber users,
> Does anyone have any idea how to visualize modes from PCA analysis
> (done with ptraj). Also, I would like to find a recent review about
> the PCA applied to MD trajectories...and the data interpretation.
> Thanks a lot
> bvlad
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Mon Sep 27 2004 - 17:53:00 PDT
Custom Search