Re: AMBER: dihedral

From: Thomas E. Cheatham, III <cheatham.chpc.utah.edu>
Date: Sun, 26 Sep 2004 20:13:42 -0600 (Mountain Daylight Time)

> trajin md1.crd 1 50
> trajin md2.crd 1 50
> dihedral dih .N1:1 .C17:1 .C18:1 .O4:1 out tor.dat
> go
> The following is part of the output file,tor.dat:กก
> 1.00 nan0x7fffffff
> 2.00 nan0x7fffffff

Make sure that 4 atoms were properly selected by looking at the output
from ptraj. My guess is that the atom selection did not work.

Try:

dihedral dih :1.N1 :1.C17 :1.C18 :1.O4


-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Mon Sep 27 2004 - 03:53:00 PDT
Custom Search