Hi,
the mm-pbsa and the thermodynamic integration methods might be of
interest for you. Both are described in the amber manual.
Cheers,
Oliver
Xiao He wrote:
> Dear Amber users,
>
> How to use Amber to manage binding free energy calculations for drug-protein interaction?
>
> Xiao He
> hx.itcc.nju.edu.cn
> 2004-09-18
>
>
>
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--
_______________________________________________________________
Oliver Hucke, Dr.
Health Sciences Building - K418C
University of Washington 1959 NE Pacific St.
Dept. of Biochemistry phone: (206) 685 7046
Box 357742 fax : (206) 685 7002
Seattle, WA 98195-7742 email: ohucke.u.washington.edu
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Received on Sun Sep 19 2004 - 06:53:00 PDT