Dear sir
My name is Morris. I wet a problem when I was using the IMAGE function
of the PTRAJ.
Due to the periodic box condition, my DNA and its bindtion protein were
seperated visually. For my analysis, I tried to used the PTRAJ to put them
together. According the instruction, I use the IMAGE. But I can't solve the
problem.
The commands which I had used are listed bleow:
1, image origin, I got single strand back. The other one is still in the other
side of the box.
2, image center bymask :195-218, no function.
3, image center:195-218 bymask :195-218, still no function
the 195-218 is the residue number of DNA double helix
If you have similiar experience, please let me know your solution. I'll
appreciate it.
Sincerely
Y. Morris Chen
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sat Sep 11 2004 - 02:53:00 PDT
