AMBER: make install error

From: Abd Ghani Bin Abd Aziz <>
Date: Fri, 10 Sep 2004 19:21:15 +0800

Dear amber,

i try to install amber6 to my cluster computer. i already installed mpich
1.2.6. this are the steps that i used to install amber

1. i install amber for a single processor
 - i do "export AMBERHOME=/usr/local/amber/amber6
 - in /src i do "ln -sf Machines/Machine.g77 MACHINE
 - then i do make install (everything was fined)
 - i try to run my minimization in my server and then i found that it took
 only 49% of my cpu's power.. why is it happen? why the job did not used
 100% of my cpu's power?

2. then i try to install amber6 for mpich version. what i did is just like
 - i do 'ln -sf Machines/Machine.g77_mpich MACHINE
 - and the i try to make install in /sander but i got this error msg :-

root.alpha sander]# make install
( SYSDIR=`../sysdir dir` ; echo sysdir is $SYSDIR ; \
                cd $SYSDIR ; make sys.a )
sysdir is ERROR:/usr/local/amber6/amber6/src/MACHINE-NOT-A-FILE
/bin/sh: line 1: cd: ERROR:/usr/local/amber6/amber6/src/MACHINE-NOT-A-FILE:
No such file or directory
make[1]: Entering directory `/usr/local/amber6/amber6/src/sander'
make[1]: *** No rule to make target `sys.a'. Stop.
make[1]: Leaving directory `/usr/local/amber6/amber6/src/sander'
make: *** [syslib] Error 2

i hope u all can help me..

ABd Ghani

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Received on Fri Sep 10 2004 - 13:25:59 PDT
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