Re: AMBER:

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Mon, 30 Aug 2004 14:33:38 -0700 (PDT)

> Does anyone know how to make protonate produce nomenclature for leap in
> the first place.

You could look at the source code.

> Or at least have tleap recognize the original HG nomenclature?

You can use 'addAtomMap' (or similar) to map pdb atom names
to amber template names.

Bill
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