You can use ptraj to extract snapshot and do cluster analysis. It's part
of amber suite.
Guanglei
Xin Hu wrote:
> Hello,
> I have a question about the analysis of MD trajectory from Amber 8. How
> can I extract all the snapshots (such as save as PDB file) from the MD
> trajectory, and generally, is there a way to cluster these ensembles of
> MD snapshot?
>
> Thank you very much for your help.
>
>
> Xin
>
>
> ---
>
>
>
>
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Received on Thu Sep 02 2004 - 01:15:11 PDT
