AMBER: different cooling schedules for simulated annealing

From: Madalin Giambasu <giambasu.biochim.ro>
Date: Wed, 11 Aug 2004 14:51:09 +0300 (EEST)

I wander if there is an elegant way to impose different cooling schedules
(like

Ti= Tinitial - (time step)**A
where A = ln(Tinitial - Tfinal)/ln(nomber of steps)
(for more examples see: http://fconyx.ncifcrf.gov/~lukeb/simanf1.html)

using for example loops, definition of variables,etc. ( programming tools
like CHARMM can
do).

I am not reffering to cooling schedules of tipe T(n+1) = T(n) * constant
as this &wt option can do !


Thanks
 


-------------------------------------------------------
Madalin G. Giambasu
Junior Research Assistant
Institute of Biochemistry of Romanian Academy of Science
Splaiul Independentei 296, 060031, Bucharest 17, Romania
Phone: (+4)021.223.90.69; FAX: (+4)021.223.90.68

-------------------------------------------------------


-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Aug 11 2004 - 12:53:00 PDT
Custom Search