Re: AMBER: Free energies using Sander in Amber8

From: David A. Case <case.scripps.edu>
Date: Mon, 24 May 2004 21:36:22 -0700

On Tue, May 25, 2004, Jiten wrote:
>
> I am wondering if the free energies calcaulations in sander (amber8) would
> be possible with the octahedron peroidic box (Non-orthognal systems ) unlike
> in gibbs( amber7) accepts orthogonal systems only.

Yes, sander can do free energies with the truncated octahedral box.

....dac
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Tue May 25 2004 - 05:53:01 PDT
Custom Search