AMBER: solvent cap and eedmeth

From: Oliver Hucke <ohucke.u.washington.edu>
Date: Thu, 06 May 2004 16:31:42 -0700

Dear amber users,

is it correct that a solvent cap should be used together with
"eedmeth=5", i.e. with distance dependent dielectric?

 From the streptavidin/biotin tutorial as well as from scanning the
archive of the mailing list I have this impression.

What exactly means the combinatin of e.g. "cut=12" with "eedmeth=5"?


Your help is very much appreciated,

Oliver 

-- 
_______________________________________________________________
Oliver Hucke, Dr.
                               Health Sciences Building - K418C
University of Washington      1959 NE Pacific St.
Dept. of Biochemistry         phone: (206) 685 7046
Box 357742                    fax  : (206) 685 7002
Seattle, WA 98195-7742        email: ohucke.u.washington.edu
_______________________________________________________________
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Fri May 07 2004 - 00:53:00 PDT
Custom Search