Re: AMBER: trajectory file

From: Bill Ross <>
Date: Tue, 23 Mar 2004 14:20:31 -0800 (PST)

> > STREAM s1 1000/minhm_1000_51.pdb 1000/minhm_1000_1.pdb;
> Using default parm ( for STREAM s1
> stream: opening 1000/minhm_1000_1.pdb
> Error: 1000/minhm_1000_1.pdb: full pdb format not supported
> Only ATOM records in amber order allowed
> The PDB were obtaine from restart files using ambpdb.

I suspect they may have TER cards. 'egrep ATOM x.pdb > x1.pdb'
will pull out the ATOM records.

> I wonder if instead of using PDB files, I can use the restart files.
Good idea - this is even simpler and faster.

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Received on Tue Mar 23 2004 - 22:53:00 PST
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