Hello all,
I successfully compiled pmemd 3.1 on Redhat 9 with ifc 7.1. I also had
to add -lpthread to get it to work but after that it went smoothly (same
for the multiprocessor builds with both lammpi and mpich).
On Thu, 2004-03-11 at 19:57, Robert Duke wrote:
> Obdulia -
> I presume you are dealing with pmemd 3.1 here? I also presume this is a
> uniprocessor build, but for reasons I don't fully understand, it looks like
> you need to include a -lpthread in the LOADLIB line of the MACHINE file. I
> have only recently gotten access to later redhat versions, and have had lots
> of grief which will hopefully get sorted out as Intel gets its act together
> and gets a truly functioning ifc8. I am in the process of downgrading a
> RHEL 3.1 AMD 64 installation on a dual opteron workstation to RH 9; even
> though I can emulate 32 bit mode for the builds, there are (presumably)
> threads problems that crash or hang the 3.1 AMD64 system. SO as I get more
> things worked out, we will post suggestions on the Amber web site. Other
> folks that have worked this stuff out, please speak up. David Case, isn't
> loyd a RH9 system that successfully builds/runs pmemd?
> Regards - Bob Duke
> ----- Original Message -----
> From: "Obdulia Rabal" <mrabal.iqs.es>
> To: <amber.scripps.edu>
> Sent: Thursday, March 11, 2004 1:36 PM
> Subject: AMBER: PMEMD COMPILATION REDHAT
>
>
> >
> > Dear all:
> >
> > I am trying to compile src.pmemd under RedHat 9.0 with ifc 7.1 compiler.
> >
> > I have read in a related e-mail
> > http://amber.ch.ic.ac.uk/archive/200401/0027.html
> > that
> > maybe there is a problem with compilation because RedHat 9.0 uses 2.3.2
> > glibc.
> >
> > The following message appears when compiling:
> >
> >
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(fstop.o)(.text+0xaa): In
> > function `libi_exit':
> > : referencia a `pthread_self' sin definir
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(fstop.o)(.text+0xb6): In
> > function `libi_exit':
> > : referencia a `pthread_equal' sin definir
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(threadsafe.o)(.text+0x23): In
> > function `f_claim_mutex':
> > : referencia a `pthread_mutex_lock' sin definir
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(threadsafe.o)(.text+0x33): In
> > function `f_exitthread':
> > : referencia a `pthread_exit' sin definir
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(threadsafe.o)(.text+0x53): In
> > function `f_release_mutex':
> > : referencia a `pthread_mutex_unlock' sin definir
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(f90init.o)(.text+0x1b): In
> > function `f90_init':
> > : referencia a `pthread_self' sin definir
> > /opt/intel/compiler70/ia32/lib/libIEPCF90.a(f90fioerr.o)(.text+0x4d3): In
> > function `f_f77ioerr':
> > : referencia a `__ctype_b' sin definir
> > /opt/intel/compiler70/ia32/lib/libcxa.a(exception.o)(.text+0x7d): In
> > function `std::set_unexpected(void (*)())':
> > : referencia a `pthread_mutex_lock' sin definir
> > /opt/intel/compiler70/ia32/lib/libcxa.a(exception.o)(.text+0x95): In
> > function `std::set_unexpected(void (*)())':
> > : referencia a `pthread_mutex_unlock' sin definir
> > /opt/intel/compiler70/ia32/lib/libcxa.a(exception.o)(.text+0x107): In
> > function `std::set_terminate(void (*)())':
> > : referencia a `pthread_mutex_lock' sin definir
> > ......
> > and so on.
> >
> > Could anybody help me?
> >
> > Thanks in advance.
> > OBdulia Rabal
> > amber.scripps.edu
> > -----------------------------------------------------------------------
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>
>
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--
---------------------------------------
Dr. David Smith
Department of Chemistry
Ludwig Maximilians University
Butenandt-Str. 5-13, D-81377 Munich
Germany
Tel.: +49 (0)89 2180 77740
Fax.: +49 (0)89 2180 77738
e-mail: David.Smith.cup.uni-muenchen.de
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Received on Fri Mar 12 2004 - 14:53:01 PST
