Amber Archive Dec 2003 by thread
275 messages
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Starting
Wed Jan 14 2004 - 15:53:02 PST,
Ending
Wed Jan 14 2004 - 15:53:13 PST
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Re: AMBER: Re: Nmode problem
Wu Yingliang
(Mon Dec 01 2003 - 05:34:40 PST)
Re: AMBER: Re: Nmode problem
Holger Gohlke
(Mon Dec 01 2003 - 06:17:37 PST)
AMBER: NAD+ and NADH amber parameters
Jiten
(Mon Dec 01 2003 - 06:01:17 PST)
Re: AMBER: NAD+ and NADH amber parameters
David A. Case
(Mon Dec 01 2003 - 08:35:56 PST)
Re: AMBER: NAD+ and NADH amber parameters
Jiten
(Sun Dec 07 2003 - 20:17:53 PST)
Re: AMBER: NAD+ and NADH amber parameters
Ulf Ryde
(Mon Dec 08 2003 - 03:05:25 PST)
AMBER: Temperature dependent properties of TIP4P and TIP5P
rluo.uci.edu
(Mon Dec 08 2003 - 09:00:21 PST)
RE: AMBER: NAD+ and NADH amber parameters
Ross Walker
(Mon Dec 01 2003 - 09:07:40 PST)
Re: AMBER: NAD+ and NADH amber parameters
Ulf Ryde
(Tue Dec 02 2003 - 05:20:26 PST)
Re: AMBER: NAD+ and NADH amber parameters
Ross Walker
(Sun Dec 07 2003 - 22:22:56 PST)
AMBER: partial charge
Li Ying
(Mon Dec 01 2003 - 09:31:56 PST)
Re: AMBER: partial charge
David A. Case
(Mon Dec 01 2003 - 22:46:04 PST)
Re: AMBER: partial charge
Li Ying
(Tue Dec 02 2003 - 11:19:22 PST)
Re: AMBER: partial charge
David A. Case
(Tue Dec 02 2003 - 12:06:02 PST)
Re: AMBER: partial charge
Li Ying
(Wed Dec 03 2003 - 10:08:14 PST)
AMBER: Compiling on Suse 9 Pro with ifc...
Herbert Georg
(Mon Dec 01 2003 - 11:17:15 PST)
Re: AMBER: Compiling on Suse 9 Pro with ifc...
David A. Case
(Mon Dec 01 2003 - 12:49:33 PST)
Re: AMBER: Compiling on Suse 9 Pro with ifc...
Herbert Georg
(Wed Dec 03 2003 - 05:26:07 PST)
Re: AMBER: Compiling on Suse 9 Pro with ifc...
Herbert Georg
(Wed Dec 03 2003 - 06:04:30 PST)
Re: AMBER: Compiling on Suse 9 Pro with ifc...
David A. Case
(Thu Dec 04 2003 - 08:42:15 PST)
Re: Re: AMBER: Compiling on Suse 9 Pro with ifc...
Ye Mei
(Fri Dec 05 2003 - 20:44:49 PST)
Re: AMBER: Compiling on Suse 9 Pro with ifc...
Herbert Georg
(Wed Dec 03 2003 - 11:13:42 PST)
Re: AMBER: Compiling on Suse 9 Pro with ifc...
Herbert Georg
(Thu Dec 04 2003 - 04:56:55 PST)
AMBER: Sander / Anal
Emmanuel Giudice
(Mon Dec 01 2003 - 12:06:00 PST)
Re: AMBER: Sander / Anal
David A. Case
(Mon Dec 01 2003 - 12:58:32 PST)
Re: AMBER: Sander / Anal
Emmanuel Giudice
(Fri Dec 05 2003 - 09:54:20 PST)
AMBER: basic questions
Wei Wang
(Mon Dec 01 2003 - 15:02:52 PST)
Re: AMBER: basic questions
David A. Case
(Mon Dec 01 2003 - 22:37:59 PST)
Re: AMBER: basic questions
Wei Wang
(Tue Dec 02 2003 - 08:23:13 PST)
Re: AMBER: basic questions
David A. Case
(Tue Dec 02 2003 - 08:37:42 PST)
AMBER: sander output
Dave S Walker
(Mon Dec 01 2003 - 18:04:31 PST)
Re: AMBER: sander output
Carlos Simmerling
(Mon Dec 01 2003 - 18:37:06 PST)
Re: AMBER: sander output
Dave S Walker
(Thu Dec 04 2003 - 16:41:05 PST)
Re: AMBER: sander output
David A. Case
(Thu Dec 04 2003 - 16:51:03 PST)
Re: AMBER: Pseudouridine force field parameters
Peter Gannett
(Tue Dec 02 2003 - 04:45:01 PST)
AMBER: about H-bond definition for TIP3P
Nikolai Smolin
(Tue Dec 02 2003 - 05:44:19 PST)
AMBER: Ptraj-HBOND
Taner E. Dirama
(Tue Dec 02 2003 - 10:42:58 PST)
AMBER: Anal/MMPBSA
Wu Yingliang
(Tue Dec 02 2003 - 17:16:02 PST)
Re: AMBER: Anal/MMPBSA
David A. Case
(Tue Dec 02 2003 - 17:29:46 PST)
AMBER: segmentation fault
Do Anh Tuan
(Tue Dec 02 2003 - 20:56:32 PST)
Re: AMBER: segmentation fault
David A. Case
(Wed Dec 03 2003 - 09:46:46 PST)
AMBER: GIBBS - PMFquestion
Jiri Matousek
(Wed Dec 03 2003 - 02:47:41 PST)
AMBER: how to calculate vibration frequency?
A. Hungie
(Wed Dec 03 2003 - 06:46:26 PST)
Re: AMBER: how to calculate vibration frequency?
David A. Case
(Wed Dec 03 2003 - 08:59:41 PST)
Re: AMBER: missing of VdW Parameters for N3
wendy.cornell.pharma.novartis.com
(Wed Dec 03 2003 - 07:18:23 PST)
AMBER: MM-PBSA question
Giovanni
(Wed Dec 03 2003 - 10:10:10 PST)
Re: AMBER: MM-PBSA question
Holger Gohlke
(Wed Dec 03 2003 - 10:58:23 PST)
AMBER: Resp Esp charge Derive (RED v-1.0) release
FyD
(Wed Dec 03 2003 - 11:09:39 PST)
AMBER: Paramters for beta and gamma peptides
Jagannadh B
(Thu Dec 04 2003 - 04:34:43 PST)
RE: Re: AMBER: ANAL/MMPBSA
Wu Yingliang
(Wed Dec 03 2003 - 23:53:25 PST)
Re: AMBER: ANAL/MMPBSA
Holger Gohlke
(Thu Dec 04 2003 - 00:42:06 PST)
AMBER: TFE solvent box
John
(Thu Dec 04 2003 - 03:16:33 PST)
AMBER: TFE solvent box
RAJA SWAMINATHAN
(Thu Dec 04 2003 - 20:34:03 PST)
RE: AMBER: TFE solvent box
John
(Fri Dec 05 2003 - 06:25:42 PST)
AMBER: xleap-N/C terminus
John
(Wed Dec 10 2003 - 04:34:13 PST)
Re: AMBER: xleap-N/C terminus
Jiten
(Wed Dec 10 2003 - 05:10:15 PST)
RE: AMBER: xleap-N/C terminus
John
(Wed Dec 10 2003 - 07:46:22 PST)
Re: AMBER: xleap-N/C terminus
David A. Case
(Wed Dec 10 2003 - 08:33:52 PST)
Re: AMBER: xleap-N/C terminus
Bill Ross
(Wed Dec 10 2003 - 10:14:06 PST)
RE: AMBER: xleap-N/C terminus
Dalmaris, John
(Thu Dec 11 2003 - 10:01:35 PST)
RE: AMBER: xleap-N/C terminus
Bill Ross
(Thu Dec 11 2003 - 10:33:09 PST)
Re: Re: AMBER: ANAL/MMPBSA
Wu Yingliang
(Thu Dec 04 2003 - 05:29:41 PST)
AMBER: NO2-TYR
arubin.unmc.edu
(Thu Dec 04 2003 - 09:30:24 PST)
AMBER: Amber - compiler help
Malone, Scott
(Thu Dec 04 2003 - 14:11:53 PST)
RE: AMBER: Amber - compiler help
Chris Moth
(Thu Dec 04 2003 - 14:45:10 PST)
Re: AMBER: Amber - compiler help
David A. Case
(Thu Dec 04 2003 - 16:54:07 PST)
AMBER: initial structures
Raghunadha Reddy Burri
(Mon Dec 08 2003 - 07:21:28 PST)
Re: AMBER: initial structures
Carlos Simmerling
(Mon Dec 08 2003 - 07:51:04 PST)
AMBER: Re: initial structures
Raghunadha Reddy Burri
(Mon Dec 08 2003 - 09:19:10 PST)
Re: AMBER: Re: initial structures
David A. Case
(Mon Dec 08 2003 - 09:30:57 PST)
AMBER: MD
L Jin
(Mon Dec 08 2003 - 09:45:01 PST)
AMBER: gaff atom types for phosphor compouds
astrid.maass
(Tue Dec 09 2003 - 05:51:33 PST)
Re: AMBER: gaff atom types for phosphor compouds
Junmei Wang
(Tue Dec 09 2003 - 07:28:08 PST)
AMBER: Small problems
L Jin
(Mon Dec 08 2003 - 09:47:47 PST)
AMBER: Mg2+ parameters for RNA usage
Vlad Cojocaru
(Wed Dec 10 2003 - 05:38:59 PST)
Re: AMBER: Mg2+ parameters for RNA usage
Jiri Sponer
(Wed Dec 10 2003 - 06:21:24 PST)
Re: AMBER: Mg2+ parameters for RNA usage
Pascal Auffinger
(Wed Dec 10 2003 - 07:30:47 PST)
Re: AMBER: Mg2+ parameters for RNA usage
Peter VARNAI
(Wed Dec 10 2003 - 08:06:30 PST)
Re: AMBER: Mg2+ parameters for RNA usage
Jiri Sponer
(Wed Dec 10 2003 - 11:32:57 PST)
Re: AMBER: Mg2+ parameters for RNA usage
Bill Ross
(Wed Dec 10 2003 - 10:07:49 PST)
AMBER: RESP charges
Youyi Peng
(Wed Dec 10 2003 - 06:34:58 PST)
Re: AMBER: RESP charges
David A. Case
(Wed Dec 10 2003 - 08:31:38 PST)
Re: AMBER: RESP charges
Youyi Peng
(Wed Dec 10 2003 - 09:28:40 PST)
Re: AMBER: RESP charges
Jiten
(Wed Dec 10 2003 - 09:55:51 PST)
Re: AMBER: RESP charges
Joey Harriman
(Wed Dec 10 2003 - 10:05:44 PST)
Re: AMBER: RESP charges
David A. Case
(Wed Dec 10 2003 - 10:28:00 PST)
Re: AMBER: RESP charges
Junmei Wang
(Wed Dec 10 2003 - 10:38:15 PST)
Re: AMBER: RESP charges
Youyi Peng
(Wed Dec 10 2003 - 12:57:56 PST)
Re: AMBER: RESP charges
Junmei Wang
(Wed Dec 10 2003 - 13:07:24 PST)
Re: AMBER: RESP charges
Youyi Peng
(Wed Dec 10 2003 - 14:48:05 PST)
Re: AMBER: RESP charges
Junmei Wang
(Wed Dec 10 2003 - 15:29:19 PST)
Re: AMBER: RESP charges
Youyi Peng
(Wed Dec 10 2003 - 14:50:46 PST)
Re: AMBER: RESP charges
Youyi Peng
(Thu Dec 11 2003 - 08:41:45 PST)
Re: AMBER: RESP charges
Junmei Wang
(Thu Dec 11 2003 - 08:55:21 PST)
Re: AMBER: RESP charges
Youyi Peng
(Thu Dec 18 2003 - 07:20:43 PST)
Re: AMBER: RESP charges
Junmei Wang
(Thu Dec 18 2003 - 13:17:28 PST)
Re: AMBER: RESP charges
Youyi Peng
(Thu Dec 18 2003 - 15:31:51 PST)
Re: AMBER: RESP charges
Junmei Wang
(Thu Dec 18 2003 - 18:29:45 PST)
AMBER: About Temperature Regulation
L Jin
(Wed Dec 10 2003 - 07:09:00 PST)
Re: AMBER: About Temperature Regulation
David A. Case
(Wed Dec 10 2003 - 08:30:24 PST)
Re: AMBER: About Temperature Regulation
L Jin
(Wed Dec 10 2003 - 09:06:25 PST)
AMBER: Antechamber & Ptraj/Rdparm
L Jin
(Wed Dec 10 2003 - 07:07:25 PST)
AMBER: Nitrated Tyr
arubin.unmc.edu
(Wed Dec 10 2003 - 08:36:45 PST)
AMBER: MOPAC from antechamber
Beale, John
(Wed Dec 10 2003 - 09:46:02 PST)
Re: AMBER: MOPAC from antechamber
Joey Harriman
(Wed Dec 10 2003 - 10:08:13 PST)
Re: AMBER: Antechamber & Ptraj/Rdparm
Bill Ross
(Wed Dec 10 2003 - 10:17:37 PST)
Re: AMBER: Antechamber & Ptraj/Rdparm
L Jin
(Fri Dec 12 2003 - 03:35:46 PST)
Re: AMBER: Antechamber & Ptraj/Rdparm
L Jin
(Wed Dec 31 2003 - 03:44:00 PST)
Re: AMBER: Antechamber & Ptraj/Rdparm
David A. Case
(Wed Dec 31 2003 - 07:47:46 PST)
AMBER: a simple question about HBond energy...
Florent Barbault
(Thu Dec 11 2003 - 00:04:27 PST)
Re: AMBER: a simple question about HBond energy...
David A. Case
(Fri Dec 12 2003 - 13:57:47 PST)
Re: AMBER: a simple question about HBond energy...
Bill Ross
(Fri Dec 12 2003 - 14:16:42 PST)
AMBER: Carbohydrate connectivity
Bimo Ario Tejo
(Thu Dec 11 2003 - 07:14:05 PST)
Re: AMBER: Carbohydrate connectivity
Jiten
(Thu Dec 11 2003 - 08:04:44 PST)
Re: AMBER: Carbohydrate connectivity
David A. Case
(Thu Dec 11 2003 - 08:09:08 PST)
AMBER: GBSA problem
northrop.chem.ucla.edu
(Thu Dec 11 2003 - 15:28:27 PST)
Re: AMBER: GBSA problem
Wu Yingliang
(Thu Dec 11 2003 - 20:20:05 PST)
AMBER: lifetime in ptraj hbond
Fajar Rakhman Wibowo
(Fri Dec 12 2003 - 01:28:45 PST)
Re: AMBER: lifetime in ptraj hbond
Martin Lepsik
(Fri Dec 12 2003 - 05:29:28 PST)
AMBER: ambpdb
L Jin
(Fri Dec 12 2003 - 02:43:36 PST)
Re: AMBER: ambpdb
ch cureton
(Fri Dec 12 2003 - 02:47:06 PST)
Re: AMBER: ambpdb
L Jin
(Fri Dec 12 2003 - 03:24:42 PST)
Re: AMBER: ambpdb
ch cureton
(Fri Dec 12 2003 - 03:53:17 PST)
AMBER: adding extra salt
Vlad Cojocaru
(Fri Dec 12 2003 - 05:34:55 PST)
AMBER: Antechamber:charges missing
L Jin
(Fri Dec 12 2003 - 07:45:35 PST)
Re: AMBER: adding extra salt
Bill Ross
(Fri Dec 12 2003 - 08:44:07 PST)
AMBER: order parameter
myang
(Fri Dec 12 2003 - 12:25:17 PST)
Re: AMBER: order parameter
David A. Case
(Fri Dec 12 2003 - 13:29:26 PST)
AMBER: nmode, trajectory
kbyun.wesleyan.edu
(Fri Dec 12 2003 - 09:05:08 PST)
Re: AMBER: nmode, trajectory
Holger Gohlke
(Sat Dec 13 2003 - 07:42:39 PST)
AMBER: parmscan
Jessica Swanson
(Fri Dec 12 2003 - 10:39:19 PST)
AMBER: non-zero 10-12 coefficient
Bimo Ario Tejo
(Sat Dec 13 2003 - 06:44:49 PST)
Re: AMBER: non-zero 10-12 coefficient
David A. Case
(Sat Dec 13 2003 - 12:48:12 PST)
AMBER: How to use quasih?
A. Hungie
(Thu Dec 11 2003 - 08:12:23 PST)
Re: AMBER: How to use quasih?
David A. Case
(Thu Dec 11 2003 - 08:34:39 PST)
AMBER: Heme and Zn parameters
Vema Aparna
(Sun Dec 14 2003 - 06:04:43 PST)
AMBER: Energy map
L Jin
(Mon Dec 15 2003 - 06:42:52 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 06:57:29 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 07:17:31 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 07:37:30 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 07:57:31 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 08:27:32 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 08:57:31 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 09:17:32 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 09:37:32 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 09:57:32 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 10:17:33 PST)
Re: AMBER: Energy map
Tammy Smith
(Mon Dec 15 2003 - 10:37:33 PST)
AMBER: Message removed at request of author
Name Removed
(Mon Dec 15 2003 - 07:29:55 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 07:37:30 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 07:57:31 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 08:27:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 08:47:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 09:17:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 09:37:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 09:57:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 10:27:33 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 10:47:34 PST)
Re: AMBER: water neighborhood of amide hydrogens
Bill Ross
(Mon Dec 15 2003 - 11:26:29 PST)
Re: AMBER: water neighborhood of amide hydrogens
Thomas E. Cheatham, III
(Mon Dec 15 2003 - 09:29:00 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 09:47:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 10:07:32 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 10:27:33 PST)
Re: AMBER: water neighborhood of amide hydrogens
Tammy Smith
(Mon Dec 15 2003 - 10:47:34 PST)
AMBER: length of deltaG calcs
Heather A.Carlson
(Mon Dec 15 2003 - 07:32:48 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 07:37:30 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 07:57:31 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 08:27:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 08:47:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 09:07:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 09:37:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 09:57:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 10:17:33 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 10:37:33 PST)
Re: AMBER: length of deltaG calcs
David Smith
(Mon Dec 15 2003 - 08:16:26 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 08:37:31 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 08:57:31 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 09:17:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 09:37:32 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 09:57:33 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 10:17:33 PST)
Re: AMBER: length of deltaG calcs
Tammy Smith
(Mon Dec 15 2003 - 10:37:33 PST)
AMBER: question about namelist
aini.UMDNJ.EDU
(Mon Dec 15 2003 - 07:42:04 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 07:47:30 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 08:07:31 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 08:27:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 08:47:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 09:07:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 09:27:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 09:47:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 10:07:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 10:27:33 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 10:47:34 PST)
Re: AMBER: question about namelist
Holger Gohlke
(Mon Dec 15 2003 - 08:10:05 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 08:27:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 08:47:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 09:07:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 09:27:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 09:47:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 10:07:32 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 10:27:33 PST)
Re: AMBER: question about namelist
Tammy Smith
(Mon Dec 15 2003 - 10:47:34 PST)
Re: AMBER: question about namelist
Suse Broyde
(Mon Dec 15 2003 - 09:37:58 PST)
Re: AMBER: question about namelist
Ioana Cozmuta
(Mon Dec 15 2003 - 11:14:40 PST)
Re: AMBER: question about namelist
Piotr Cieplak
(Mon Dec 15 2003 - 14:02:33 PST)
AMBER: minimization on sander
Herbert Georg
(Mon Dec 15 2003 - 12:05:25 PST)
Re: AMBER: minimization on sander
Bill Ross
(Mon Dec 15 2003 - 12:32:39 PST)
Re: AMBER: minimization on sander
Herbert Georg
(Mon Dec 15 2003 - 13:21:13 PST)
AMBER: no "Input orientation" in g98 log
Lee, Matt
(Mon Dec 15 2003 - 15:13:10 PST)
AMBER: Ibelly and Ewald error message when ewald should be off
Ben Cossins
(Tue Dec 16 2003 - 15:01:52 PST)
AMBER: Nmode analysis ptn-ligand complex
Jory Zmuda
(Tue Dec 16 2003 - 15:11:13 PST)
AMBER: nmode statistics
kbyun.wesleyan.edu
(Wed Dec 17 2003 - 11:52:51 PST)
Re: AMBER: nmode statistics
Holger Gohlke
(Wed Dec 17 2003 - 23:09:05 PST)
AMBER: PMEMD Performance on Beowulf systems
Stephen.Titmuss.csiro.au
(Thu Dec 18 2003 - 19:19:59 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
Robert Duke
(Thu Dec 18 2003 - 20:35:40 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
Carlos Simmerling
(Fri Dec 19 2003 - 06:53:12 PST)
RE: RE: AMBER: PMEMD Performance on Beowulf systems
Aldo Jongejan
(Sun Dec 21 2003 - 23:27:41 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
Viktor Hornak
(Mon Dec 22 2003 - 05:47:42 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
David E. Konerding
(Mon Dec 22 2003 - 07:53:20 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
Carlos Simmerling
(Mon Dec 22 2003 - 08:12:37 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
David E. Konerding
(Mon Dec 22 2003 - 08:57:23 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
Carlos Simmerling
(Mon Dec 22 2003 - 09:06:39 PST)
AMBER: HT vs no HT
John Mongan
(Mon Dec 22 2003 - 11:18:31 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
Robert Duke
(Mon Dec 22 2003 - 08:44:47 PST)
Re: AMBER: PMEMD Performance on Beowulf systems
David E. Konerding
(Mon Dec 22 2003 - 09:04:03 PST)
AMBER: MD: restrt
L Jin
(Fri Dec 19 2003 - 02:47:55 PST)
AMBER: special gaff atom types available?
astrid.maass
(Fri Dec 19 2003 - 03:58:30 PST)
Re: AMBER: special gaff atom types available?
David A. Case
(Sat Dec 20 2003 - 08:25:14 PST)
AMBER: Ewald in Amber 7
Ben Cossins
(Fri Dec 19 2003 - 07:49:11 PST)
Re: AMBER: Ewald in Amber 7
David A. Case
(Fri Dec 19 2003 - 09:30:23 PST)
AMBER: Vibration frequency of nucleobases
A. Hungie
(Fri Dec 19 2003 - 09:48:03 PST)
AMBER: Toolchest
Shuang Ding
(Fri Dec 19 2003 - 12:45:08 PST)
AMBER: initial velocity
Fan Gao
(Fri Dec 19 2003 - 16:56:16 PST)
Re: AMBER: initial velocity
Peter Oelschlaeger
(Fri Dec 19 2003 - 18:08:43 PST)
AMBER: Curves parameters UU and PP
Peter Gannett
(Fri Dec 19 2003 - 20:08:02 PST)
Re: AMBER: Curves parameters UU and PP
Surjit Dixit
(Sat Dec 20 2003 - 07:45:28 PST)
AMBER: vlimit?
Ran Ye
(Sun Dec 21 2003 - 14:15:57 PST)
Re: AMBER: vlimit?
David A. Case
(Mon Dec 22 2003 - 09:24:18 PST)
Re: AMBER: vlimit?
Ryan Ye
(Tue Dec 23 2003 - 20:04:45 PST)
Re: AMBER: vlimit?
David A. Case
(Fri Dec 26 2003 - 10:18:16 PST)
Re: AMBER: vlimit?
Bill Ross
(Sun Dec 21 2003 - 20:04:40 PST)
AMBER: using sander without SHAKE
Wayne Dawson
(Sun Dec 21 2003 - 22:38:14 PST)
Re: AMBER: using sander without SHAKE
David A. Case
(Mon Dec 22 2003 - 09:22:09 PST)
Re: AMBER: using sander without SHAKE
Wayne Dawson
(Wed Dec 24 2003 - 08:39:43 PST)
Re: AMBER: using sander without SHAKE
David A. Case
(Wed Dec 24 2003 - 10:06:40 PST)
Re: AMBER: using sander without SHAKE
Bill Ross
(Wed Dec 24 2003 - 11:03:43 PST)
AMBER: GIBBS - PMF question: How to get <dV/d_lam> during TI calculations?
Jiri Matousek
(Mon Dec 22 2003 - 01:51:25 PST)
Re: AMBER: GIBBS - PMF question: How to get <dV/d_lam> during TI calculations?
David A. Case
(Tue Dec 23 2003 - 11:18:39 PST)
AMBER: RESP charge redistribution
Youyi Peng
(Mon Dec 22 2003 - 13:27:13 PST)
AMBER: umbrella sampling with AMBER
Mey Khalili
(Mon Dec 22 2003 - 15:14:24 PST)
Re: AMBER: umbrella sampling with AMBER
David A. Case
(Mon Dec 22 2003 - 17:48:30 PST)
2 FREE Worldwide Airline Tickets Worth $1600 for just $189!
Bette Pagan
(Mon Dec 22 2003 - 19:05:04 PST)
AMBER: MSMS
Salma B. Rafi
(Tue Dec 23 2003 - 10:36:18 PST)
Re: AMBER: MSMS
David A. Case
(Tue Dec 23 2003 - 10:56:32 PST)
AMBER: PMEMD Performance on IBM SP
David Skinner
(Tue Dec 23 2003 - 12:00:45 PST)
AMBER: Basic potential question:
a b
(Wed Dec 24 2003 - 01:29:56 PST)
AMBER: Basic potential question:
Wayne Dawson
(Wed Dec 24 2003 - 07:56:37 PST)
Re: AMBER: Basic potential question:
FyD
(Wed Dec 24 2003 - 10:35:22 PST)
Re: AMBER: Basic potential question:
Piotr Cieplak
(Wed Dec 24 2003 - 10:47:57 PST)
Re: AMBER: Basic potential question:
Wayne Dawson
(Thu Dec 25 2003 - 19:04:37 PST)
AMBER: MSE
Wen Li
(Wed Dec 24 2003 - 08:25:33 PST)
Re: AMBER: MSE
David A. Case
(Wed Dec 24 2003 - 10:08:59 PST)
AMBER: Constant temperature
L Jin
(Sat Dec 27 2003 - 03:29:13 PST)
Re: AMBER: Constant temperature
David A. Case
(Sat Dec 27 2003 - 22:46:46 PST)
Re: AMBER: Constant temperature
Bill Ross
(Sat Dec 27 2003 - 09:14:00 PST)
AMBER: roar topology and coordinate files
PSR04996.mailstudenti.unimi.it
(Mon Dec 29 2003 - 01:11:28 PST)
Re: AMBER: roar topology and coordinate files
M. L. Dodson
(Mon Dec 29 2003 - 05:35:42 PST)
Re: AMBER: roar topology and coordinate files
M. L. Dodson
(Mon Dec 29 2003 - 12:15:57 PST)
Re: AMBER: roar topology and coordinate files
Bill Ross
(Mon Dec 29 2003 - 16:14:53 PST)
Re: AMBER: roar topology and coordinate files
M. L. Dodson
(Mon Dec 29 2003 - 16:42:49 PST)
AMBER: The restart file generated by Ptraj
Ling Zhang
(Mon Dec 29 2003 - 12:49:52 PST)
AMBER: The lost velocities in the restart file generated by Ptraj
Ling Zhang
(Mon Dec 29 2003 - 13:12:47 PST)
Re: AMBER: The lost velocities in the restart file generated by Ptraj
Bill Ross
(Mon Dec 29 2003 - 16:11:54 PST)
AMBER: problems with pressure control
Endres, Robert G.
(Tue Dec 30 2003 - 06:38:02 PST)
Re: AMBER: problems with pressure control
David A. Case
(Tue Dec 30 2003 - 10:03:06 PST)
Last message date
:
Wed Jan 14 2004 - 15:53:13 PST
Archived on
: Wed Dec 25 2024 - 05:53:21 PST
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