RE: AMBER: image question

From: Rhonda Torres <>
Date: Tue, 25 Nov 2003 10:50:36 -0800 (PST)

Hi Ying,

If you add:

center :1-22

to your list of ptraj input commands (assuming that 1-22 represent
the residues of your molecule), you should see that RMS problem disappear.


Rhonda A. Torres
The Scripps Research Institute
Department of Molecular Biology
10550 N. Torrey Pines Rd. TPC 15
La Jolla, CA 92037

phone: (858) 784-9781
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Received on Tue Nov 25 2003 - 18:53:01 PST
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