Hi Joey,
I can't tell from your command to run antechamber:
> antechamber -i LIGAND_NO_H_AM1.out -fi gout -o ligand_no_H_am1bcc.mol2 -fo mol2 -c bcc
but what is the input file format you are using? Is it from a g98 output, etc. ?
Rhonda
Rhonda A. Torres
The Scripps Research Institute
Department of Molecular Biology
10550 N. Torrey Pines Rd. TPC 15
La Jolla, CA 92037
email: torres.scripps.edu
phone: (858) 784-9781
fax: (858) 784-8896
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Received on Mon Nov 10 2003 - 18:53:01 PST
