I have:
Linux klingsor.imb-jena.de 2.4.18-3smp #1 SMP Wed Nov 27 12:26:38 CET 2002 i686 unknown
Red Hat Linux release 7.3 (Valhalla)
amber7, compiled using gcc 3.2.1 and machine-file Machine.g77_mpich
I started with:
FILES_IN
PARM p1 1tubg_min3.top;
STREAM s1 mdpme4_g.mdcrd;
FILES_OUT
TABLE tab1 rms_to_start;
DECLARE
GROUP gALL (RES 1 - 440);
RMS r1 FIT gALL s1;
OUTPUT
TABLE tab1 r1;
END
Output:
- CARNAL -
AMBER 6.0
COORDINATE ANALYSIS
input stdin
>> FILES_IN
>> PARM p1 1tubg_min3.top;
>
Reading parm file (1tubg_min3.top)
parm: opening 1tubg_min3.to
>> STREAM s1 mdpme4_g.mdcrd;
>
Using default parm (1tubg_min3.top) for STREAM s1
(box will be read from stream)
stream: opening mdpme4_g.mdcrd
mdpme4_g.mdcrd: sys err Value too large for defined data type
Can other programs open the file?
I can open the file with VMD and load some frames.
Bill Ross wrote:
>>I have very large mdcrd file with trajectories - 11 GB. Carnal can not
>>open this file for analysis. What should I do?
>>
>
>What is your carnal cmd file, and what output? What computer?
>Can other programs open the file?
>
>Bill Ross
>
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--
Volodymyr Nechiporuk-Zloy
Institute of Molecular Biotechnology <http://www.imb-jena.de>
Dept. Single Cell and Single Molecule Techniques
<http://www.imb-jena.de/www_kog/>
Beutenbergstrasse 11
D - 07745 Jena
Germany
Phone: *49 3641 656169
Fax: *49 3641 656166
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Received on Wed Nov 05 2003 - 13:53:03 PST
