AMBER: how to measure the minor groove widths of a DNA?

From: <>
Date: Tue, 28 Oct 2003 12:16:06 -0500 (EST)

Hi, Dear Amber users,

I am running a testing job for a DNA in water. I want to compare my
results with a literature figure about the minor groove widths along the
base pairs, can any one give me some hint on what to measure ? (I am going
to use Carnal)

I am not a bio people and new to the AMBER.


 Xiongce Zhao			Phone:412-624-9630
 1249 Benedum Hall		Fax:412-624-9639
 University of Pittsburgh
 Pittsburgh, PA 15261		Second
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Received on Tue Oct 28 2003 - 17:53:01 PST
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