AMBER: how to measure the minor groove widths of a DNA?

From: <zhaoxc.puccini.che.pitt.edu>
Date: Tue, 28 Oct 2003 12:16:06 -0500 (EST)

Hi, Dear Amber users,

I am running a testing job for a DNA in water. I want to compare my
results with a literature figure about the minor groove widths along the
base pairs, can any one give me some hint on what to measure ? (I am going
to use Carnal)

I am not a bio people and new to the AMBER.

Thanks 


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 Xiongce Zhao			Phone:412-624-9630
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Received on Tue Oct 28 2003 - 17:53:01 PST
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