Re: Re: AMBER: a problem with xleap

From: Ye Mei <>
Date: Thu, 16 Oct 2003 09:34:51 +0800

David A. Case,

Thank you for your reply. My OS is SuSE8.2 with XFree86-4.3.0-111.
I tried as you told me to do. The error only occurs when I type "make World", it seems that it cannot recognize the syntax of "Imakefile". And following is the error message.

Building LEaP for the X Window System Release 604

Thu Oct 16 09:22:32 CST 2003
make Makefile
make[1]: Entering directory `/soft/amber7/src/leap'
+ rm -f Makefile.bak
+ mv -f Makefile Makefile.bak
imake -DUseInstalled -I/usr/X11R6/lib/X11/config -DDoNormalLib=1 -DDoProfileLib=0 -DDoDebugLib=0 -DDoSharedLib=0 -DLEAP_CONFIG=0x0000 -Wundef -DTOPDIR=. -DCURDIR=.
make[1]: Leaving directory `/soft/amber7/src/leap'
make Makefiles
make[1]: Entering directory `/soft/amber7/src/leap'
making Makefiles in src/Wc...
        mv -f Makefile Makefile.bak
make[2]: Entering directory `/soft/amber7/src/leap'
In file included from Imakefile:26,
                 from /usr/X11R6/lib/X11/config/Imake.tmpl:2030,
                 from Imakefile.c:35:
.../Leap_lib.tmpl:10: warning: "NormalLibX" redefined
.../Leap_lib.tmpl:6: warning: this is the location of the previous definition
In file included from /usr/X11R6/lib/X11/config/Imake.tmpl:2030,
                 from Imakefile.c:35:
Imakefile:28: invalid preprocessing directive ###
Imakefile:29: invalid preprocessing directive ##
Imakefile:47: invalid preprocessing directive #CREATE_DEFS
Imakefile:63: invalid preprocessing directive ###
Imakefile:64: invalid preprocessing directive ##
Imakefile:168: invalid preprocessing directive ###
Imakefile:196: invalid preprocessing directive ###
imake: Exit code 1.
make[2]: *** [src/Wc/Makefile] Error 1
make[2]: Leaving directory `/soft/amber7/src/leap'
make[1]: [Makefiles] Error 2 (ignored)
make[1]: Leaving directory `/soft/amber7/src/leap'
make cleandir
make[1]: Entering directory `/soft/amber7/src/leap'
rm -f -rf ./src/X11
rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"*
make[1]: Leaving directory `/soft/amber7/src/leap'
make includes
make[1]: Entering directory `/soft/amber7/src/leap'
mkdir ./src/X11
including in ./src/Wc...
make[2]: Entering directory `/soft/amber7/src/leap/src/Wc'
Makefile:8: *** missing separator. Stop.
make[2]: Leaving directory `/soft/amber7/src/leap/src/Wc'
make[1]: *** [includes] Error 2
make[1]: Leaving directory `/soft/amber7/src/leap'
make: *** [World] Error 2

======= 2003-10-15 07:31:00 =======

>On Wed, Oct 15, 2003, Ye Mei wrote:
>> I have a problem with compiling amber7 with pgf77_mpich. It gives the error
>> message as follows, and I have no idea how to solve it. Could anyone help?
>Note that leap is purely a C program, so you are really using gcc. But it
>looks like your X build environment is not correctly set up in some way.
>Since you don't give any information about your operating system, it's hard
>to be very specific. You might try the following: go to the src/leap
>directory and type:
>make clean
>make World
>It's not clear if this is what you did or not. The error log you included
>is not complete enough.
>Sorry to ask so many questions, but we really need more information to be of
>much help.
>David A. Case | e-mail:
>Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
>The Scripps Research Institute | phone: +1-858-784-9768
>10550 N. Torrey Pines Rd. | home page:
>La Jolla CA 92037 USA |
>The AMBER Mail Reflector
>To post, send mail to
>To unsubscribe, send "unsubscribe amber" to

= = = = = = = = = = = = = = = = = = = =

Best regards!
Ye Mei

The AMBER Mail Reflector
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Received on Thu Oct 16 2003 - 02:53:00 PDT
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