RE: AMBER: infinitely long DNA & moil-view?

From: Bill Ross <>
Date: Tue, 14 Oct 2003 13:36:56 -0700 (PDT)

> 1) You have to know the periodicity of your DNA (how many bp per turn)
> and choose the one that exactly matches complete turns (13 bp, as I
> recall).

(Different for A and B conformations.)

> 2) Construct it and manually modify the end residues and connect the
> ends. You'd need to define your own residues, for instance.

I think the standard non-terminal residues would work (DG, DA, DC, DT).

Bill Ross

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Received on Tue Oct 14 2003 - 21:53:01 PDT
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