=>> Init data
    Presuming executables of amber suite to be in /usr/local/amber7/exe

=>> Reading input parameters
    Found PREFIX => raf
    Found PATH => ./
    Found COMPLEX => 0
    Found RECEPTOR => 0
    Found LIGAND => 1
    Found LIGPT => ./raf_wt.prmtop
    Found GC => 0
    Found AS => 0
    Found DC => 0
    Found MM => 1
    Found GB => 1
    Found PB => 0
    Found MS => 1
    Found NM => 0
    Found IGB => 4
    Found SALTCON => 0.00
    Found EXTDIEL => 80.0
    Found SURFTEN => 0.0072
    Found SURFOFF => 0.00
    Found PROBE => 1.4
    Found RADII => ./atmtypenumbers
    Found TRAJECTORY => ../prod_II/md_nvt_prod_pme_01.mdcrd.gz
    Found TRAJECTORY => ../prod_II/md_nvt_prod_pme_02.mdcrd.gz
    Found TRAJECTORY => ../prod_II/md_nvt_prod_pme_03.mdcrd.gz
    Found TRAJECTORY => ../prod_II/md_nvt_prod_pme_04.mdcrd.gz
    Found TRAJECTORY => ../prod_II/md_nvt_prod_pme_05.mdcrd.gz

=>> Checking sanity
    Checking GENERAL
    Checking MM
    Checking GB
    Checking MS

=>> Creating input
    Sander input

=>> Calculating energy / entropy contributions

=>> Doing statistics
=>> Values of global variables
    TEMP   = 300
    R      = 8.314
    gammaP = 0.00542
    betaP  = 0.92
    gammaG = 0.0072
    betaG  = 0.00
=>> Reading input
=>> Reordering files
    Final order:
    1. raf_lig.all.out: - 
=>> Reading files
    Reading raf_lig.all.out
=>> Treat special parameters