Re: AMBER: complete pdb structure

From: David A. Case <>
Date: Wed, 13 Aug 2003 22:30:08 -0700

On Thu, Aug 14, 2003, Mi-Kyung Seo wrote:
> I got pdb file from Brookhaven protein database and tried to add missing
> atoms. (backbone atoms and side chains)
> Is there any way to complete pdb file retrieved from PDB databank with
> AMBER 7.0?

This is not something that Amber does. You need to search for homology
modeling and loop/side-chain prediction algorithms. A variety of these
are available, many as web services.


David A. Case                     |  e-mail:
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
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Received on Thu Aug 14 2003 - 06:53:01 PDT
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