Re: AMBER: secondary structure

From: Holger Gohlke <gohlke.scripps.edu>
Date: Wed, 13 Aug 2003 07:55:22 -0700

Yuguang Mu wrote:
>
> Dear All,
> DO you have some good suggestions about the programs to assign
> the secondary structures of peptides, proteins with known coordinates,
> such as, alpha, beta, turns, 3_10 helix ?

Have a look at the DSSP program by W. Kabsch & C. Sander
(http://www.cmbi.kun.nl/gv/dssp/).

Best regards

Holger

>
> Dr. Yuguang Mu
> Institute for Physical and Theoretical Chemistry
> J.W. Goethe University Frankfurt am Main
> Marie Curie Str. 11
> 60439 Frankfurt/Main, Germany
> Tel: +49-(0)69-798-29711
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu

-- 
+++++++++++++++++++++++++++++++++++++++++++++
Dr. Holger Gohlke
Dept. of Molecular Biology, TPC15
The Scripps Research Institute
10550 N. Torrey Pines Rd.
La Jolla, CA 92037   USA
phone: +1-858-784-9788
fax:   +1-858-784-8896
email: gohlke.scripps.edu
+++++++++++++++++++++++++++++++++++++++++++++
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Aug 13 2003 - 16:53:01 PDT
Custom Search