Re: AMBER: import pdb file in xleap

From: David A. Case <case.scripps.edu>
Date: Thu, 7 Aug 2003 14:30:51 -0700

On Fri, Aug 08, 2003, Mi-Kyung Seo wrote:
>
> 1. When I open pdb file which is created by Insight and edit this unit
> (unit editor), the structure contatins only dots, no bonds.
> However, everything is ok with pdb viewer (e.g.VMD)

You need to issue the "bondByDistance" command to get LEaP to put in
bonds using default criteria. VMD is doing the equivalent thing
automatically.

...hope this helps...dac 

-- 
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David A. Case                     |  e-mail:      case.scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
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Received on Thu Aug 07 2003 - 22:53:00 PDT
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