Hi,
I am trying to get used to Amber5. i have got 2 questions
1. When i tried to protonate 1DPU.pdb which
i downloaded from the PDB website i got the following error message
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Here are the mystery protons from input file:
HG CYS 219 11.83 -1.71 -2.66
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2. the second molecule that i am trying on is 1FGU. with this molecule i
have taken only subunit B and deleted the subunits A and C.
Protonate did work fine with this but when i try to get prmtop and prmcrd
files using leap i got the following error message
------------------------
FATAL: Atom .R<CCYS 289>.A<HG 13> does not have a type.
Failed to generate parameters
Parameter file was not saved.
-----------------------
can anyone please help me with these errors
Regards
-Venkat
Received on Wed May 14 2003 - 18:53:02 PDT
